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Author SHA1 Message Date
Gergő Magyar
fbffa96554
fix(lbug/mcp): exact symbol content + 0-based line storage with 1-based MCP display (#2377, #2379) (#2380) 
* fix(lbug): store exact symbol content snippets

* fix(ingestion): emit 0-based line numbers for COBOL/JCL/scope/markdown nodes

COBOL/JCL processors, the scope-graph emitter, and the markdown Section
emitter stored 1-based startLine/endLine, unlike every tree-sitter node
(0-based). The exact-content slice (#2379) then dropped each symbol's
declaration line for those languages. Convert to 0-based at the graph-node
emission boundary via toZeroBasedLine — leaving parser-internal .line values,
L${line} node/edge IDs, and containment checks untouched.

Refs #2377, #2379

* refactor(lbug): single source of truth for symbol-content labels

Extract SYMBOL_NODE_LABELS so the exact-content label set can't drift the way
the inline copy did in #2379. csv-generator derives EXACT_SYMBOL_CONTENT_LABELS
from it; manifest-extractor's near-identical allowlist is left behavior-unchanged
(intentional subset, #2325-test-locked) with a documented cross-reference.

Refs #2379

* test(ingestion): cover 0-based emitter output and pin exact-content slicing

- csv-pipeline: replace the blank-buffer fixture (a +/-1 shift silently passed)
  with directly-adjacent neighbors; add one-line-symbol and Section (+/-2 fallback)
  cases.
- cobol resolver: assert COBOL Module and JCL job/step emit 0-based startLine.
- markdown CRLF: update Section startLine/endLine expectations to 0-based.

Refs #2377, #2379

* feat(mcp): present 1-based line numbers in context/query/impact tools

GraphNode startLine/endLine are stored 0-based (tree-sitter rows), which
surprised users querying them (they don't line up with editors/sed). Add
toDisplayLine and apply it at the context/query/impact response boundaries so
line numbers are editor/sed-aligned. Raw cypher stays 0-based (documented in the
schema resource); BasicBlock/PDG statement lines (already 1-based) and internal
join params are left untouched.

Refs #2377

* test(mcp): assert 1-based tool exposure with raw cypher staying 0-based

context() reports startLine+1 (editor/sed aligned); a raw cypher RETURN of the
same node keeps the stored 0-based value. Guards against double-conversion and
leaking the display shift into raw results.

Refs #2377

* fix(mcp): stop query() double-converting BM25 line numbers

bm25Search applied toDisplayLine to its result rows, and query()'s
aggregation loop applied it again, so BM25-matched symbols reported
lines shifted +2 (stored 0-based 41 read as 43, not 42) while
semantic-matched symbols were correct. bm25Search is called only from
query(); return raw 0-based rows and let the single aggregation-loop
conversion handle both retrievers.

Adds a query() BM25 regression test asserting stored 41 -> 42 (would
be 43 if double-converted), which the prior mcp-line-display test —
covering only context()+cypher — never exercised. (#2380, #2377)

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* fix(mcp): use ?? not || so first-line symbols keep their line number

`sym.startLine || sym[4]` treated a legitimate 0-based startLine of 0
as absent, so context()/query() dropped startLine/endLine for every
symbol on line 1 of its file — every COBOL Module (toZeroBasedLine(1)
= 0) and markdown h1. `??` only falls through to the positional
fallback on null/undefined, preserving a real 0. This also repairs the
rename definition-edit path, which consumes context()'s value.

Adds a context() first-line (startLine:0 -> 1) assertion. (#2380, #2377)

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* fix(mcp): make group/cross-repo trace line numbers 1-based consistently

A group/cross-repo trace presented 1-based endpoints (via
resolveSymbolForGroup) but 0-based hops (tagHops copies port.trace
output verbatim), so one response mixed bases. Wrap the trace port
adapter (traceForGroup) to convert hop lines to 1-based too, matching
the endpoints. Single-repo trace dispatches directly (not through this
port) and stays 0-based — full single-repo parity is a tracked
follow-up. core/group stays display-agnostic (no mcp import).

Extends the cross-trace e2e test to assert hops share the endpoints'
base (checkout 10 -> 11, getUsers 1 -> 2). (#2380)

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* fix(mcp): present explain/pdg_query anchor line 1-based

resolveBlockAnchor converted its ambiguous-candidate lines to 1-based
but left the resolved-target anchor raw 0-based, so the same tool
reported two bases depending on whether the target was ambiguous.
Convert the display anchor to 1-based via toDisplayLine. The BasicBlock
join param (symStart: sym.startLine + 1) is untouched — it targets the
1-based BasicBlock id space, not display.

Asserts the resolved anchor is 1-based (targetFn stored 10 -> 11). (#2380)

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* fix(mcp): bump schema + PDG result versions for the line-number change

The 0-based storage flip for COBOL/JCL/markdown/scope (#2377/#2379)
changed on-disk line semantics, and the PDG result startLine is now
1-based (#2380). Neither shipped a version bump, so an incremental
re-analyze would preserve old 1-based rows (mixed-base index rendered
one line too high) and PDG consumers got no signal.

- INCREMENTAL_SCHEMA_VERSION 5 -> 6 (forces a one-time full re-analyze)
- PDG_RESULT_VERSION 1 -> 2 (result-shape discriminator)

Updates the version-pinning tests, the pdgResultVersion result type,
and the tools.ts PDG output-contract doc. (#2380)

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* test(group): guard manifest label list against SYMBOL_NODE_LABELS drift

manifest-extractor's CUSTOM_CONTRACT_RESOLVE_QUERY hand-lists the
contract-resolvable labels as a deliberate subset of the shared
SYMBOL_NODE_LABELS, guarded only by a comment — the same drift class
(#2379) the shared-set refactor eliminated elsewhere. Derive the
query's label set and assert it is a strict subset whose difference is
exactly {Namespace, Variable, Module}, so adding a symbol label without
a conscious manifest decision fails. Query string stays literal
(#2325-test-locked). (#2380)

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* docs(mcp): document which tools present 1-based vs 0-based line numbers

The schema-resource note listed only context/query/impact as 1-based.
After the trace/anchor fixes it now enumerates the full set —
context, query, impact, group/cross-repo trace, and explain/pdg_query
anchors are 1-based; raw Cypher and single-repo trace stay 0-based
(full single-repo-trace parity is a tracked follow-up); BasicBlock/PDG
statement lines are separately 1-based. (#2377, #2380)

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* test(mcp): pin impact() line-value display (close the coverage gap)

The prior mcp-line-display test only asserted context() + raw cypher,
which is why the query() double-conversion (#2380) shipped green. Adds
an impact() line-value assertion via the ambiguous-candidate path (the
only impact response that surfaces a per-candidate line): two same-name
symbols force ambiguity and the candidate at stored 0-based 41 must
read 42. (#2380)

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* test(mcp): fix stale rename #2283 mock after 1-based context display

rename resolves its symbol via context(), which now presents startLine
1-based (#2377), then subtracts 1 to recover the 0-based file index.
The #2283 mock stored startLine:1 but put `oldName` on the file's line
0, so after the 1-based shift the definition edit no longer matched and
the write-failure path never fired — the test read 'success' instead of
'partial'. Align the mock content to its stored line (oldName on
0-based line 1). Pre-existing failure surfaced once ubuntu/coverage
completed on this branch. (#2380)

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* test(mcp): consolidate line-display tests into one shared DB block

The query()/BM25 case had spun up a second full LadybugDB + FTS setup;
fold it into the single existing block (adding FTS + the Zqxwvbm seed
there) so the file builds one DB, not two. Trims per-file setup cost —
relevant to the Windows platform-sensitive suite's under-load 15-minute
timeout. Same five assertions, all green. (#2380)

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: kigland <shuaizhicheng336@gmail.com>
Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
 2026-07-06 16:16:45 +01:00
Gergő Magyar
083aedbc41
refactor(ingestion): delete legacy call-resolution DAG + heritage processor (RING4-1, #942) (#2023) 
* refactor(ingestion): delete legacy call-resolution DAG + heritage processor (#942)

RING4-1: all 16 production languages (incl. Vue #940) are registry-primary, so
the legacy resolution legs only ran under the now-removed CI parity gate. Calls
and inheritance now resolve exclusively through scope-resolution
(Registry.lookup, preEmitInheritanceEdges, emitHeritageEdges, buildMro →
MethodDispatchIndex).

Removed:
- Call-resolution DAG: call-processor.ts legacy body (processCalls,
  processCallsFromExtracted, resolveCallTarget + all resolver/dispatch/chain
  helpers), model/resolve.ts MRO-via-HeritageMap, model/heritage-map.ts,
  type-env DAG types; inferImplicitReceiver/selectDispatch LanguageProvider
  hooks + Ruby impls; DispatchDecision/ImplicitReceiverOverride/ReceiverEnriched.
- Legacy heritage path: heritage-processor.ts, heritage-types.ts,
  heritage-extractors/, @heritage.* tree-sitter queries, heritageExtractor/
  heritageDefaultEdge/interfaceNamePattern wiring, worker + parse-impl heritage
  passes (parse-worker/parsing-processor lockstep), cross-file-impl DAG pass.
- Scope-parity infrastructure entirely (no legacy↔registry parity left to run):
  scripts/run-parity.ts, scripts/ci-list-migrated-languages.ts,
  ci-scope-parity.yml, test:parity, and the scope-parity ci.yml gate. Resolver
  integration tests still run via the normal tests job.

Kept (shared infra, NOT call-DAG-only): type-env.ts buildTypeEnv (field
extraction / structure phase / embeddings), model/resolve.ts c3Linearize +
gatherAncestors (mro-processor mroPhase), route/fetch/exported-type-map helpers
in call-processor.ts, preEmitInheritanceEdges (legacy-edge dedup simplified).

Acceptance: grep for resolveCallTarget/inferImplicitReceiver/selectDispatch/
buildHeritageMap/HeritageMap/processHeritage/heritageExtractor/@heritage. is zero
across src + test. tsc clean (both packages); resolver integration suite green
(bit-compatible EXTENDS/IMPLEMENTS/CALLS); scope-capture fingerprints unchanged
(python re-baselined: removed redundant ignored captures). ARCHITECTURE.md
updated to scope-resolution-only.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* fix(review): apply autofix feedback (#942)

ce-code-review autofix pass on the RING4-1 deletion:
- parse-cache.ts: bump SCHEMA_BUMP 2→3 — ParseWorkerResult lost its `heritage`
  field, so stale on-disk caches must invalidate (prevents a rollback replaying
  a heritage-less cache into legacy code) [api-contract P2].
- parse-impl.ts: drop 3 now-unused type imports (ExtractedCall,
  ExtractedAssignment, FileConstructorBindings) left by the deferred-block
  removal — would fail the eslint CI gate [correctness+maintainability P1].
- AGENTS.md / CLAUDE.md / scope-resolver.ts contract doc: fix stale pointers to
  the deleted "§ Call-Resolution DAG" section + removed hooks; preserve the
  language-neutrality rule [project-standards P1].
- registry-primary-flag.ts / cross-file.ts / parse-impl.ts: refresh stale
  comments referencing deleted symbols (legacy DAG, runCrossFileBindingPropagation).

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* refactor(ingestion): remove the vestigial isRegistryPrimary flag (#942)

With the legacy call-resolution DAG deleted, the per-language
`REGISTRY_PRIMARY_<LANG>` / `isRegistryPrimary` / `MIGRATED_LANGUAGES` flag had
only one meaningful state — every production language resolves via
scope-resolution — and an explicit `=0` override could only *disable*
resolution with no fallback (a footgun the review flagged). Removing it.

- Delete `registry-primary-flag.ts` and the now-dead `shadow-harness.ts`
  (legacy↔registry shadow-parity tool) + its test.
- Collapse the three flag gates to their behavior-preserving outcome
  (`SCOPE_RESOLVERS == MIGRATED_LANGUAGES`, so this is a no-op):
  - scope-resolution phase now runs for every registered `SCOPE_RESOLVERS`
    entry (was `∩ MIGRATED_LANGUAGES`).
  - import-processor `addImportGraphEdge` + parse-impl `shouldAccumulate`:
    the legacy emit/accumulate paths were already inert for migrated
    languages (scope-resolution owns IMPORTS via the imports-to-edges bridge);
    drop the flag term.
- Collapse flag-branching tests to the scope-resolution path and delete the
  csharp legacy-`=0`-leg describe blocks; remove the ruby/rust-scope env-forcing
  hooks (no-ops now).
- Refresh docs/comments (ARCHITECTURE.md "one registration", scope-resolver
  cookbook, phase deps) — adding a language is now a single `SCOPE_RESOLVERS`
  registration.

Verified: tsc clean (both packages); resolver integration tests green
(747 assertions across cobol/csharp/ruby/rust/typescript/go, IMPORTS edges
intact); grep for the flag symbols is zero across src + test.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* style(format): prettier formatting on #942 changes

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* fix(ci): drop legacy heritage-capture tests + re-baseline scope-capture fingerprints (#942)

Two CI failures from the #942 cleanup, surfaced by the tri-review + CI:

- tree-sitter-languages.test.ts: two tests asserted `@heritage.*` captures
  (Rust trait-impl, Dart extends/implements/with) that this PR removed. The
  acceptance grep used `@heritage\.` (with `@`); these reference the runtime
  capture name `heritage.trait` (no `@`), so they slipped the earlier sweep.
  Inheritance is now covered by the resolver integration suite. (fixed macos-latest)

- Re-baselined the scope-capture bench fingerprints for csharp/rust/ruby/java/
  javascript/kotlin (baselines.json) + python (python-scope/baseline-fingerprint.txt).
  The earlier test-cleanup reworded comments inside the lang-resolution fixture
  files (Shapes.cs, child.rs, derived.rb, IA.java/Plain.java, Service.js, F.kt,
  app.py) to scrub deleted-symbol references for the acceptance grep; those are
  the bench corpus, so capture node positions shifted. Capture LOGIC is
  unchanged — verified `--check` passes for all 14 langs + python. (fixed benchmarks)

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* docs/chore: scrub remaining REGISTRY_PRIMARY + deleted-symbol references (#942)

Tri-review P3 follow-ups (verified):
- TESTING.md: rewrite the "Scope-resolution parity" section — the legacy
  dual-leg (REGISTRY_PRIMARY_<LANG>=0/1) and `npm run test:parity` no longer
  exist; resolver tests run once on the sole scope-resolution path in the
  normal tests job.
- scripts/bench-scope-resolution.ts: drop the inert `REGISTRY_PRIMARY_PYTHON=1`
  env set + usage hint (the flag is gone).
- ruby/scope-resolver.ts, php/captures.ts: re-point doc-comments off the
  deleted heritage-map.ts / heritage-processor.ts to the current behavior.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* fix(ci): prettier format + regenerate scope-capture goldens (#942)

Two more CI failures, same root cause as the bench re-baseline (the
test-cleanup reworded comments in lang-resolution bench/golden-corpus fixtures):

- quality/format: prettier on tree-sitter-languages.test.ts (blank line left by
  the deleted heritage-capture tests) + TESTING.md (the rewritten section).
- tests/ubuntu/coverage: `csharp-captures-golden` (and python/ruby/rust) drifted
  because the edited fixtures feed the per-language capture-golden snapshots too
  (not just the bench). Regenerated via UPDATE_GOLDEN=1. Verified safe: only the
  edited-fixture entries changed; csharp `captureGroups` unchanged (38) — digest
  shifted from comment-position only; capture LOGIC untouched. 1168 scope-
  resolution tests pass.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* test(resolvers): drop createResolverParityIt wrapper, use vitest it directly

The parity-aware `it` wrapper became a no-op when #942 removed the legacy
call-resolution DAG (it just returned vitest's `it`). Remove it entirely so
the resolver tests call vitest's `it` directly instead of shadowing it with a
local `const it` (or `pit`/`rustParityIt`):

- helpers.ts: delete createResolverParityIt + its now-unused vitestIt import
  and VitestIt type.
- 16 files: drop `const it = createResolverParityIt('x')` and import `it`
  from vitest instead.
- ruby.test.ts (pit) + rust.test.ts (rustParityIt): rename calls to `it`.
- Scrub every comment that described the removed wrapper / dual-mode parity
  skip / legacy_skip gate (vue-scope, js/ts/dart/php/python headers, rust x2,
  cpp, swift x4, rust-coverage). Genuine test rationale is kept; only the
  vestigial two-leg framing is dropped. Accurate "legacy DAG (removed in
  #942)" historical notes are retained.

No fixtures touched (no bench/golden re-baseline). tsc clean; rust+ruby
resolver suites green (323 tests, incl. #1992 worker-path parity after a
local dist build).

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
 2026-06-04 11:07:37 +01:00
Sparsh
4f7697c43b
fix: COBOL parsing-layer coverage gaps — F17-F23 (#1925) (#1959) 2026-06-01 21:08:07 +01:00
Sparsh
23bf594a70
fix(standalone): wire standalone providers into scope-extractor for registry-primary (COBOL Ring 3 flip) (#1842) 
* feat(cobol): migrate COBOL to scope-based resolution (regex provider)

Migrate COBOL to scope-based registry resolution, validating the
parse-source-agnostic contract — COBOL uses regex, not tree-sitter,
but implements the same LanguageProvider interface via emitScopeCaptures.

Phase 1-5 complete per #941 DoD.

New files:
  languages/cobol/captures.ts       — emitScopeCaptures wrapping regex tagger
  languages/cobol/interpret.ts      — import/type-binding/receiver hooks
  languages/cobol/index.ts          — barrel export
  languages/cobol/scope-resolver.ts — ScopeResolver wiring (9 fields, 3 toggles)

Modified files:
  languages/cobol.ts                — wire 4 scope-resolution hooks
  registry.ts                       — register cobolScopeResolver
  registry-primary-flag.ts          — document REGISTRY_PRIMARY_COBOL

Fixtures:
  17 fixture files, 30 test cases across 11 required classes
  test/integration/resolvers/cobol-scope.test.ts

Tests: 24/24 pass (default + REGISTRY_PRIMARY_COBOL=0)
tsc: zero cobol-specific errors
Shadow mode (GITNEXUS_SHADOW_MODE=1): zero crashes
Regex perf: 10K-line file in 408ms (threshold: 2000ms)

NOT added to MIGRATED_LANGUAGES — REGISTRY_PRIMARY_COBOL env var only.

* chore(cobol): add COBOL to MIGRATED_LANGUAGES

* fix(cobol): revert MIGRATED_LANGUAGES flip, fix JSDoc dup, fix arityCompatibility

* fix(standalone): wire standalone providers into scope-extractor for registry-primary (COBOL Ring 3 flip)

- Gate cobolPhase with isRegistryPrimary() guard to prevent double emission
- Wire standalone providers (parseStrategy !== 'tree-sitter') with
  emitScopeCaptures into parse-worker via extractParsedFile bridge
- Add COBOL to MIGRATED_LANGUAGES in registry-primary-flag.ts
- Fix Module scope range in captures.ts to use full program bounds
  (was just PROGRAM-ID line, causing scope containment failures)
- Update cobol.test.ts grand totals to be mode-aware
- Wrap legacy exact-count assertions in if (!isPrimary)
- Fix cobol-scope.test.ts fixture path to use __dirname (was process.cwd())

Tests:
  REGISTRY_PRIMARY_COBOL=0: 83/83 pass (59 legacy + 24 capture)
  REGISTRY_PRIMARY_COBOL=1: 28/28 pass (4 mode-aware + 24 capture)

* test(cobol): restore original test assertions, add mode-aware describe blocks alongside

- Remove if (!isPrimary) wrapper from legacy assertions
- Keep ALL 59 original tests intact and running unconditionally
- Add new 'scope-resolution mode' describe block alongside legacy tests
- New block uses isPrimary to check for scope-resolution capture output
- Legacy tests run against cobolPhase output (skipGraphPhases=true)
- Mode-aware tests validate standalone provider wiring in registry-primary mode

* fix(test): use result.graph instead of result.parsedFiles in scope-mode test

- PipelineResult has no parsedFiles field; use graph.nodes instead
- Use toBe strict equality (not.toBeNull()) per review feedback
- Object.keys for node count as suggested by reviewer

* test(cobol): add COBOL pipeline benchmark following PHP benchmark structure

- Generate synthetic COBOL codebases at 100/250/500 file scales
- Each file has 1 PROGRAM-ID, N paragraphs, cross-file CALLs, COPY books
- Measures wall-clock time, peak heap, node/edge counts
- SkipIf(!GITNEXUS_BENCH) — run with GITNEXUS_BENCH=1
- Prints table with scaling ratios and linearity assertions

* fix(bench): remove COPY from paragraphs, add REGISTRY_PRIMARY_COBOL note

- COPY statements belong only in DATA DIVISION (already present there)
- Revert copyLine inside paragraph blocks to idiomatic COBOL
- Add header note about =1 mode producing ~0 node/edge counts

* fix(bench): restore COPY in paragraphs for preprocessing stress

- COPY in paragraph blocks exercises the preprocessor expansion path
  more heavily than DATA DIVISION only placement.

* fix(bench): constant 3 paragraphs per program, add 1000-files scale, relax threshold to 4x

- Fixed paragraphsPerProgram to constant 3 for consistent scaling
- Added 1000-file scale to benchmark
- Raised assertion threshold to 4x to accommodate 100-250 step

* fix: skip standalone providers in scope-resolution phase when registry-primary

scopeResolutionPhase was reading all COBOL files from disk and running
scope-resolution for standalone providers that don't emit graph edges
yet. Added a guard: if provider.languageProvider.parseStrategy ===
'standalone', skip it entirely. Saves 68s at 1000 files in =1 mode.

* fix: remove COBOL isRegistryPrimary gate, suppress standalone IMPORTS double-emission

- Remove the isRegistryPrimary gate in cobolPhase so it runs in both modes,
  keeping cobolPhase as the sole COBOL graph-edge producer.
- Add a guard in runScopeResolution to skip emitImportEdges for standalone
  providers (parseStrategy === 'standalone'), preventing scope-resolution
  from duplicating IMPORTS edges already produced by cobolPhase.
- Scope-resolution still runs for standalone providers (capture extraction,
  model finalization, reference resolution) — only edge emission is skipped.
- Both modes: 60/60 cobol.test.ts, 24/24 cobol-scope.test.ts.

* fix: 4 review fixes — dead code removal, memory cleanup, benchmark comment, standalone-bridge test

1. Remove dead standalone guard in run.ts (phase.ts:164 is canonical).
2. Filter standalone preExtractedByPath entries in phase.ts (memory leak).
3. Update benchmark comment: cobolPhase runs in both modes.
4. Add unit test proving extractParsedFile works for COBOL standalone provider.
   Revert PipelineResult.parsedFiles — not needed with unit test approach.

* perf(cobol): memoize copybook preprocessing; make benchmark measure file-count scaling

The COBOL pipeline benchmark reported superlinear (quadratic) scaling, but the
pipeline itself is O(n) in file count. The superlinearity was a fixture artifact:
every program COPYed all floor(fileCount/5) copybooks in WORKING-STORAGE, so
emitted data-item nodes — and total work — grew O(n^2). Verified empirically:
node count grew ~2x per file-doubling; with constant per-program fan-out it grows
exactly 1x (linear), and 0/3 adversarial audits could refute the O(n) conclusion.

- benchmark: each program now COPYs a constant 3 shared copybooks so the
  benchmark measures true file-count scaling. Add a deterministic node-ratio
  assertion that fails if the O(n^2) copy-all fan-out is reintroduced.
- processor: memoize preprocessed copybook content per processCobol call so each
  copybook is preprocessed once, not once per COPY site
  (O(programs x copybooks) -> O(copybooks)). Safe: REPLACING is applied later by
  the expander on the cached pre-REPLACING content.

Verified: 246 COBOL tests pass; benchmark scales linearly (node ratio 1.0); tsc clean.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Gergő Magyar <gergomagyar@icloud.com>
Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
 2026-05-29 14:25:19 +01:00
Gergő Magyar
bf09eab95b
feat: configure prettier with pre-commit hook (#563) 
* feat: configure prettier with pre-commit hook integration

Add prettier, lint-staged, and prettier-plugin-tailwindcss at the repo
root with husky pre-commit hook integration. Moves husky from
gitnexus/ to root package.json for reliable hook installation.

- Root package.json with prepare/format/format:check scripts
- .prettierrc with endOfLine:lf and tailwindStylesheet for TW v4
- .prettierignore excluding fixtures, vendor, generated, *.d.ts, *.md
- .gitattributes enforcing LF line endings for Windows consistency
- Pre-commit hook uses direct node_modules/.bin/ paths (no npx)

* style: apply prettier formatting to entire codebase

One-time bulk format. No logic changes.
Use .git-blame-ignore-revs to skip this commit in git blame.

* chore: add .git-blame-ignore-revs for prettier format commit

* perf: pre-commit hook runs only tests related to staged files

Use vitest --related to scope test execution to tests that import
the changed files, instead of running the full suite on every commit.

* perf: remove vitest from pre-commit hook, keep in CI only

Pre-commit now runs lint-staged + tsc only. Tests run in CI
(ci-tests.yml) where they belong — keeps commits fast.

* ci: add prettier format check to quality workflow

PRs will now fail if code isn't formatted with prettier.
 2026-03-28 14:58:04 +00:00
Gergő Magyar
d2cd0b676f
feat: add COBOL language support with regex extraction pipeline (#498) 
* feat: add COBOL language support with regex extraction pipeline

Standalone COBOL processor following the markdown-processor.ts pattern:
- No LanguageProvider modification — COBOL uses regex, not tree-sitter
- No SupportedLanguages enum change — standalone processor pattern

New files:
- cobol-processor.ts — orchestrator (processCobol, isCobolFile, isJclFile)
- cobol/cobol-preprocessor.ts — regex state machine extraction (~888 LOC)
- cobol/cobol-copy-expander.ts — COPY statement expansion with circular detection
- cobol/jcl-parser.ts — JCL job/step/DD extraction
- cobol/jcl-processor.ts — JCL graph node creation

Extraction produces:
- Module nodes (PROGRAM-ID)
- Function nodes (paragraphs)
- Namespace nodes (sections)
- Property nodes (data items)
- CALLS edges (PERFORM intra-file, CALL cross-program)
- IMPORTS edges (COPY statements)
- CONTAINS edges (section → paragraph hierarchy)

Pipeline integration: single processCobol() call in Phase 2.6

54 new tests (33 COBOL + 21 JCL), all 3889 tests pass.

* docs: document custom processor pattern in pipeline.ts

Add comment block at the custom processor integration point
documenting the pattern for future non-tree-sitter language additions.

* feat(cobol): enrich graph with EXEC SQL/CICS, ENTRY points, MOVE data flow, PERFORM THRU

Maps the remaining 60% of CobolRegexResults to the graph:
- EXEC SQL blocks → CodeElement nodes + ACCESSES edges to DB tables
- EXEC CICS LINK/XCTL → CodeElement nodes + cross-program CALLS edges
- ENTRY points → Constructor nodes (registered for cross-program resolution)
- MOVE statements → ACCESSES edges (read/write data flow tracking)
- PERFORM THRU → expanded CALLS edges for range targets
- File declarations → Record nodes with assignment metadata
- Cross-program CALL 2nd pass: resolves unresolved targets after all programs processed

* test(cobol): add 26 integration tests with exact assertions + fix CICS resolution bug

Integration tests (test/integration/resolvers/cobol.test.ts):
- 26 tests covering full COBOL system extraction
- ALL assertions use exact toBe(N) — zero fuzzy assertions
- Fixtures: CUSTUPDT.cbl, AUDITLOG.cbl, CUSTDAT.cpy, RPTGEN.cbl, RUNJOBS.jcl

Bug fix (cobol-processor.ts):
- CICS LINK/XCTL cross-program resolution was broken — edges were
  created with "resolved" reason but pointing to <unresolved> targets
- Fix: use cics-link-unresolved / cics-xctl-unresolved suffix pattern
  matching the existing cobol-call-unresolved pattern
- Second-pass resolver now patches both CALL and CICS unresolved edges

All 3915 tests pass, 0 failures.

* test(cobol): exhaustive 57-test suite with strict exact assertions

Complete rewrite of COBOL integration tests using ground-truth approach:
dump the full graph, then assert EVERY node and EVERY edge.

57 tests across 9 sections:
- Node completeness: Module(3), Function(13), Namespace(2), Property(21),
  Record(1), CodeElement(8), Constructor(1) — exact sorted arrays
- Edge completeness: 22 tests covering every type+reason combination
  with exact source→target pairs
- Cross-program resolution: 6 tests verifying CALL, CICS LINK/XCTL, JCL
- COPY expansion: copybook data items in RPTGEN
- Section hierarchy: exact paragraph membership per section
- Data item ownership: exact per-module breakdown
- MOVE data flow: exact read/write pairs
- JCL integration: job/step/dataset containment
- Grand totals: CALLS(22), CONTAINS(48), IMPORTS(1), ACCESSES(7)

Fixture enhancements:
- CUSTUPDT.cbl: added INIT-SECTION + PROCESSING-SECTION, PERFORM THRU
- AUDITLOG.cbl: added ENTRY "AUDITLOG-BATCH"
- RPTGEN.cbl: added EXEC CICS XCTL

Zero fuzzy assertions — every expect uses toBe(N) or toEqual([...sorted]).

* fix(cobol): add removeRelationship API + single-quote CALL/COPY/ENTRY, PERFORM keyword skip

Phase 0A: Add removeRelationship(id) to KnowledgeGraph interface and
implementation (trivial Map.delete wrapper). Required for orphan edge
cleanup in next commit.

Phase 1A (from PR #500 review, modified):
- RE_CALL and RE_COPY_QUOTED now match both "double" and 'single' quotes
- parseSingleCopyStatement in copy-expander updated for single quotes
- PERFORM_KEYWORD_SKIP set prevents UNTIL/VARYING/WITH/TEST/FOREVER
  from being stored as false-positive perform targets
- Sequence number stripping uses /[^0-9 ]/ (preserves numeric seq numbers
  unlike PR #500's /\S/ which stripped them)
- Normalized || to ?? for regex group extraction in copy-expander

5 new graph unit tests, all 57 COBOL integration tests pass.

* fix(cobol): RE_ENTRY single-quote + remove orphan unresolved CALLS edges

Phase 1B: RE_ENTRY regex now supports both "double" and 'single' quoted
ENTRY targets. Uses named intermediates (entryName, usingClause) with ??
operator. USING capture group shifted from [2] to [3].

Phase 1C: Second-pass resolution now collects resolved orphan edge IDs
during iteration and removes them after the loop completes, using the new
graph.removeRelationship() API. Graph no longer contains phantom
<unresolved>: edges alongside their resolved replacements. CALLS count
drops from 22 to 18 (4 orphan edges removed).

* fix(cobol): Property ID collisions + O(1) Map lookup for MOVE edges

Phase 1D+3C (atomic): Property node IDs now use composite key
filePath:section:level:name instead of filePath:name. This prevents
duplicate data item names in different sections (e.g., STATUS in both
WORKING-STORAGE and LINKAGE) from silently colliding.

New generatePropertyId() helper ensures both node creation and MOVE
edge lookup use the identical key formula. buildDataItemMap() replaces
the O(n) findDataItemNode linear scan with O(1) Map lookup, built once
per file before MOVE processing.

* feat(cobol): MOVE multi-target extraction with OF/IN qualifier filtering

MOVE X TO A B C now produces write edges for all targets, not just the
first. extractMoveTargets() helper handles OF/IN qualified names
(WS-NAME OF WS-RECORD -> target is WS-NAME), subscript stripping
(WS-TABLE(I) -> WS-TABLE), and MOVE_SKIP filtering on targets.

Data model: CobolRegexResults.moves.to:string -> targets:string[]
MOVE CORRESPONDING stays single-target per COBOL standard.
Processor MOVE loop now iterates move.targets.

* feat(cobol): COPY IN/OF library, pseudotext REPLACING, dynamic CALL, PERFORM TIMES, CICS MAP unquoted

Phase 2B: COPY ... IN/OF library-name now captured as metadata in
CopyResolution (IN and OF are synonyms per COBOL-85 standard).

Phase 2C: COPY REPLACING ==pseudotext== support. Tokenizer handles
==...== delimiters alongside "quoted" strings. Pseudotext forces EXACT
type. Two-pass applyReplacing: first pass handles space-containing/
non-identifier pseudotext via global string replace; second pass handles
identifier-level LEADING/TRAILING/EXACT. New test file
cobol-copy-expander.test.ts with 10 tests.

Phase 2E: PERFORM WS-COUNT TIMES no longer produces a false-positive
perform target (checks for TIMES keyword after captured identifier).

Phase 2F: Dynamic CALL via data item (CALL WS-PROG-NAME without quotes)
now emits a CodeElement annotation node with description 'dynamic-call'
instead of silently ignoring. Adds isQuoted:boolean to call results.

Phase 3A: CICS MAP(WS-MAP-NAME) unquoted identifiers now captured.
Phase 3B: Normalized || to ?? in copy-expander (done in Phase 1A).

* feat(cobol): nested program support — capture multiple PROGRAM-IDs per file

Phase 2D: The state machine now captures all PROGRAM-IDs, not just the
first. The primary program name stays in programName; additional nested
programs go into nestedPrograms[]. The processor creates separate Module
nodes for each nested program, contained by the outer module, and
registers them in moduleNodeIds for cross-program CALL resolution.

Paragraphs/data items are not yet scoped per-program (attributed to the
outer module) — full per-program scoping is a future enhancement that
requires END PROGRAM boundary tracking in the state machine.

* test(cobol): expand integration tests for all new language features

New fixtures:
- NESTED.cbl — two PROGRAM-IDs (OUTER-PROG, INNER-PROG) for nested
  program support testing
- COPYLIB.cpy — copybook for pseudotext REPLACING test target

Modified fixtures:
- CUSTUPDT.cbl — single-quoted ENTRY 'ALTENTRY', multi-target MOVE
  (WS-AMT TO FIELD-A FIELD-B), dynamic CALL WS-PROG-NAME, COPY COPYLIB
  with pseudotext REPLACING, LINKAGE SECTION with LS-PARAM
- RPTGEN.cbl — PERFORM WS-COUNT TIMES (false-positive guard), unquoted
  MAP(WS-MAP-NAME), additional data items WS-COUNT WS-MAP-NAME

Integration test rewritten with 62 exact assertions covering:
- 5 Module, 17 Function, 33 Property, 9 CodeElement, 2 Constructor nodes
- Nested program containment (OUTER-PROG -> INNER-PROG)
- Dynamic CALL annotation (CodeElement with cobol-dynamic-call)
- Multi-target MOVE (UPDATE-BALANCE: 2 reads, 3 writes)
- Single-quoted ENTRY (ALTENTRY under CUSTUPDT)
- PERFORM TIMES guard (WS-COUNT not in CALLS)
- Orphan unresolved edge removal (zero -unresolved edges)
- Grand totals: 21 CALLS, 68 CONTAINS, 2 IMPORTS, 10 ACCESSES

* fix(cobol): pseudotext REPLACING now applies correctly via isPseudotext flag

Root cause: ==PREFIX-== matched /^[A-Z][A-Z0-9-]*$/i (trailing hyphens
allowed), routing it to the second-pass EXACT identifier match where
PREFIX-RECORD !== PREFIX- failed silently.

Fix: Propagate isPseudotext from parseReplacingClause to CopyReplacing
interface, then use it in applyReplacing first-pass condition to force
global string replacement for all pseudotext entries regardless of
whether the content looks like an identifier.

Result: COPY COPYLIB REPLACING ==PREFIX-== BY ==WS-==. now correctly
transforms PREFIX-RECORD → WS-RECORD, PREFIX-CODE → WS-CODE, etc.

* refactor(cobol): per-program scoping via boundary tracking + line-range grouping

State machine changes (minimal, ~30 lines):
- Add RE_END_PROGRAM regex for END PROGRAM program-name. detection
- Replace nestedPrograms[] with programs[] containing startLine/endLine/
  nestingDepth metadata for each PROGRAM-ID in the file
- Reset division/section/paragraph state on new PROGRAM-ID boundary
- EOF finalization flushes remaining stack entries (single-program files)
- Programs sorted by startLine (outer before inner)

Processor changes:
- Uses programs[] with line-range containment to find enclosing parent
  Module for nested programs (replaces hardcoded nestedParent logic)
- programModuleIds Map tracks Module node IDs per program name

Fixture: NESTED.cbl now includes END PROGRAM lines for both programs.

Integration test: PREFIX-* Property nodes now correctly appear as WS-*
after the pseudotext REPLACING fix from the previous commit.

* feat(cobol): free-format COBOL support (>>source free)

Auto-detects >>SOURCE FREE directive in the first 500 chars and switches
to free-format line processing:
- No column-position rules (cols 1-6 are program text, not sequence area)
- Comments use *> prefix instead of col 7 indicator
- No continuation line indicator
- Strip inline *> comments
- Skip >>SOURCE directive lines

preprocessCobolSource() skips col-1-6 stripping for free-format files.

Paragraph/section regexes relaxed from fixed 7-space prefix to flexible
whitespace with case-insensitivity (/^\s*([A-Z][A-Z0-9-]+)\.\s*$/i).
EXCLUDED_PARA_NAMES expanded with COBOL verbs (GOBACK, END-READ, etc.)
to prevent false-positive paragraph detection in free-format.

Also fixes: entry-point-scoring.ts crash when language is 'cobol'
(MERGED_ENTRY_POINT_PATTERNS[language] was undefined → optional chaining).

Benchmark on ACAS 3.01 (268 GnuCOBOL free-format programs, 10MB):
- Before: 407 nodes, 393 edges (near-empty, only file nodes)
- After:  4,297 nodes, 3,612 edges, 542 clusters, 11 flows

* fix(cobol): relax data item regexes for free-format (^\s+ to ^\s*)

RE_FD, RE_DATA_ITEM, RE_ANONYMOUS_REDEFINES, and RE_88_LEVEL all used
^\s+ which requires at least 1 leading space. In free-format mode, lines
are trimmed before processing, so data items like "01 WS-FIELD PIC X."
have no leading whitespace after trimming.

Changed to ^\s* (zero or more spaces) which works for both fixed-format
(indented lines still have spaces) and free-format (trimmed lines).

ACAS benchmark (268 GnuCOBOL programs):
- Before: 4,297 nodes, 3,612 edges (paragraphs only)
- After:  13,832 nodes, 8,615 edges (+ data items, FDs, 88-levels)

* feat(cobol): 100% structural feature coverage — GO TO, SCREEN, SD/RD, SORT, SEARCH, CANCEL, Level 66

New extractions: GO TO (CALLS edges), SCREEN SECTION data items,
SD/RD alongside FD (Record nodes), SORT/MERGE USING/GIVING (ACCESSES),
SEARCH (ACCESSES), CANCEL (CALLS), Level 66 RENAMES (Property),
IS EXTERNAL/IS GLOBAL (Property description enrichment).

ACAS: 13,951 nodes | 13,193 edges | 685 clusters | 150 flows
(+53% edges from new GO TO/SORT/SEARCH/CANCEL extractions)

* feat(cobol): enriched CICS extraction — file I/O, dynamic PROGRAM, queues, HANDLE ABEND

EXEC CICS blocks now extract:
- FILE/DATASET clause: captures VSAM file name (literal or data item ref)
  for READ/WRITE/REWRITE/DELETE/STARTBR/READNEXT/READPREV → ACCESSES edges
- PROGRAM clause: now handles unquoted variable references (dynamic CICS
  program transfer) → CodeElement annotation with cics-dynamic-program reason
- QUEUE clause: captures TS/TD queue names from WRITEQ/READQ → ACCESSES edges
- LABEL clause: captures HANDLE ABEND error handler targets → CALLS edges
- TRANSID: now handles unquoted variable references

CodeElement descriptions enriched with all captured fields (map, program,
transid, file, queue, label).

CardDemo benchmark: +49 nodes, +33 edges from enriched CICS extraction.

* feat(cobol): complete CICS command extraction — all 7 expert recommendations

From COBOL expert agent analysis:
1. ENDBR added to isRead file command list
2. LOAD added to PROGRAM edge commands (alongside LINK/XCTL)
3. Two-word commands expanded: WRITEQ/READQ/DELETEQ TS/TD, HANDLE
   ABEND/AID/CONDITION, START TRANSID
4. Queue reason differentiated: cics-queue-read/-write/-delete
5. RETURN/START TRANSID → CALLS edges to synthetic <transid> target
6. MAP → ACCESSES edges for screen traceability
7. INTO/FROM data fields extracted → ACCESSES edges to data items

Also: dataItemMap built before CICS block processing (was declared after),
CodeElement descriptions enriched with all captured CICS fields.

* test(cobol): strict exhaustive integration tests with exact edgeSet assertions

Every edge reason has exact sorted pair assertions via edgeSet(), not
just counts. Any change to extraction that adds, removes, or reorders
edges will produce a precise, descriptive failure.

Updated RPTGEN.cbl fixture with:
- GO TO EXIT-PARAGRAPH, SORT USING/GIVING, SEARCH table
- EXEC CICS READ FILE INTO, WRITEQ TS QUEUE FROM, SEND MAP FROM
- EXEC CICS HANDLE ABEND LABEL, RETURN TRANSID, XCTL PROGRAM(variable)
- ABEND-HANDLER and EXIT-PARAGRAPH paragraphs

46 tests covering 24 CALLS + 79 CONTAINS + 18 ACCESSES + 2 IMPORTS edges
across 15 distinct edge reason codes, all with exact sorted pair lists.

* fix(cobol): address 5 findings from second Claude review (compiler front-end perspective)

Finding #2: Numeric sequence numbers now stripped (changed /[^0-9 ]/ to
/\S/ in preprocessCobolSource). Lines like "000100 MAIN-PARAGRAPH." now
have cols 1-6 blanked so paragraph regex matches correctly.

Finding #11: JCL in-stream PROC ordering fixed — pre-register all PROCs
into moduleNames before step processing. Steps that EXEC a PROC defined
later in the same file now get CALLS edges.

Finding #A: PROCEDURE DIVISION USING no longer captures calling-convention
keywords (BY, VALUE, REFERENCE, CONTENT, ADDRESS, OF) as parameter names.

Finding #C: SORT/MERGE USING/GIVING now captures ALL file references
(multi-file), not just the first. Changed from single-match to section
extraction with split.

Finding #D: Section headers no longer set currentParagraph, preventing
PERFORM caller misattribution to Namespace instead of Function nodes.

* fix(cobol): address code review findings — ReDoS fix, perf, cleanup

P1 CRITICAL — ReDoS in SORT USING/GIVING:
Replaced nested-quantifier regex with safe indexOf+substring+split
approach. No backtracking possible on crafted input.

P2 — readCopy O(M) linear scan:
Added copybookByPath reverse Map for O(1) path-to-content lookup.

P3 — Dead code removal:
Deleted unused RE_SORT_USING and RE_SORT_GIVING constants.

P3 — EXCLUDED_PARA_NAMES simplification:
Replaced 20 END-* entries with startsWith('END-') prefix check.
Auto-covers future END-* verbs.

P3 — Misplaced JSDoc on removeRelationship:
Fixed comment that described removeNodesByFile instead.
Added missing JSDoc to removeNodesByFile.

Review agents: architecture-strategist, performance-oracle,
security-sentinel, code-simplicity-reviewer.

* refactor: add Cobol to SupportedLanguages with parseStrategy: standalone

New languages/cobol.ts — standalone regex processor provider with no-op
tree-sitter fields. Declares parseStrategy: 'standalone' to distinguish
from tree-sitter-based languages.

Added parseStrategy: 'tree-sitter' | 'standalone' to LanguageProviderConfig
for languages that use their own processor instead of tree-sitter.

Removed all 11 'cobol' as any casts — now uses SupportedLanguages.Cobol.
Added empty Cobol entries to entry-point-scoring and framework-detection.

* fix(cobol): 5 fixes from third Claude review + 3 regression tests

Fixes:
- Line numbers now 1-indexed in fixed-format (was 0-indexed, off-by-one
  in jump-to-definition links)
- Copybook content preprocessed before COPY expansion (sequence numbers
  and patch markers in copybooks no longer survive into expanded source)
- ENTRY USING filters calling-convention keywords (BY, VALUE, REFERENCE,
  CONTENT, ADDRESS, OF) — same fix as PROCEDURE DIVISION USING
- SORT/MERGE trailing period stripped from USING/GIVING file tokens
- Paragraph exclusion uses exact match for SECTION/DIVISION (was substring
  match that excluded valid names like CROSS-SECTION-ANALYSIS)

USING_KEYWORDS moved to module scope for reuse by both PROCEDURE DIVISION
USING and ENTRY USING handlers.

New unit tests:
- ENTRY USING BY VALUE filtering
- Paragraph names containing SECTION not excluded
- Numeric sequence numbers stripped enabling paragraph detection

* fix(cobol): address 6 findings from fourth Claude review + tests

Fourth review findings fixed:
- New #IV: PERFORM TIMES guard uses perfMatch.index instead of
  line.indexOf (prevents wrong match when target appears earlier in line)
- New #V: 88-level condition values now handle single-quoted literals
  ('Y' no longer stored with embedded quotes)
- New #I: CANCEL edges use two-pass resolution like CALL (no longer
  silently dropped when target indexed after source)
- New #3: Multi-line SORT/MERGE accumulation — sortAccum state variable
  accumulates lines until period, then extracts USING/GIVING from full
  statement (95% of production SORT statements span multiple lines)
- New #II: PROCEDURE DIVISION USING on split lines — pendingProcUsing
  flag defers parameter capture to next line if USING not on same line
- New #6 (prior): EXCLUDED_PARA_NAMES exact match for SECTION/DIVISION

Updated fixture: RPTGEN.cbl SORT now uses multi-line format with GIVING
on separate line (period-terminated). New sort-giving integration test.
ACCESSES total: 18 → 19 (new sort-giving edge from multi-line capture).

* fix(cobol): address 4 findings from fifth Claude review

Finding #B (5 reviews old): Section/paragraph node IDs now include
enclosing program name to prevent collision when nested programs share
section/paragraph names. New findOwningProgramName() helper uses
programs[] line ranges to find the innermost enclosing program.

Finding #α: pendingProcUsing now reset in the if(procUsingMatch) branch
(was only set in else branch, could leak across nested programs).

Finding #β: RE_CALL_DYNAMIC uses negative lookbehind (?<![A-Z0-9-]) to
prevent false-positive on compound identifiers like WS-CALL OCCURS.

Finding #γ: sortAccum flushed at EOF (parallel to flushSelect and
pendingFdName EOF cleanup). Prevents silent loss of SORT USING/GIVING
relationships in truncated files.

* fix(cobol): address findings from reviews 5+6 with full test coverage

Review 5 fixes:
- #α: pendingProcUsing reset in if(procUsingMatch) branch
- #β: RE_CALL_DYNAMIC negative lookbehind prevents WS-CALL false positive
- #γ: sortAccum flushed at EOF for truncated files
- #B: Section/paragraph IDs include owning program name

Review 6 fixes:
- #P: sectionNodeIds/paraNodeIds maps use program-scoped keys
  (PROGNAME:NAME). New scopedParaLookup/scopedCallerLookup helpers.
  findContainingSection updated with programs parameter.
- #Q: RETURNING added to USING_KEYWORDS for COBOL 2002+
- #R: RE_PERFORM matches both THRU and THROUGH via alternation

New unit tests (6):
- PERFORM THROUGH captures thruTarget
- PROCEDURE DIVISION USING RETURNING filters keyword
- RE_CALL_DYNAMIC no false-match on WS-CALL compound identifier
- Multi-line SORT captures USING/GIVING from continuation lines
- PROCEDURE DIVISION USING on split line via pendingProcUsing
- Copybook preprocessing strips sequence numbers

* fix(cobol): address findings from seventh Claude review + 3 tests

Review 7 fixes:
- #i: findContainingSection only updates best when lookup succeeds
  (prevents undefined overwriting valid parent section)
- #ii: RE_PROC_SECTION handles segment numbers (SECTION 30.)
- #III: procedureUsing now stored per-program on boundary stack
  entries, propagated to programs[] output. Inner programs no longer
  overwrite outer program's parameters.
- #δ: Dynamic CANCEL (CANCEL variable) now creates CodeElement
  annotation node, matching dynamic CALL behavior. RE_CANCEL_DYNAMIC
  with negative lookbehind. cancels[] gains isQuoted field.
- #Q: RETURNING added to USING_KEYWORDS (already in prev commit)
- #R: PERFORM THROUGH already fixed (THRU|THROUGH alternation)

New unit tests:
- Nested programs carry per-program procedureUsing
- SECTION with segment number detected
- Dynamic CANCEL via data item captured with isQuoted=false

* feat(cobol): link PROCEDURE DIVISION USING to LINKAGE data items + close 4 findings

Finding #10 FIXED: procedureUsing parameters now create ACCESSES edges
with reason 'cobol-procedure-using' from Module to matching LINKAGE
SECTION Property nodes. This exposes the program's parameter contract
in the graph (e.g., AUDITLOG → LS-CUST-ID, AUDITLOG → LS-AMOUNT).

Findings closed by expert agent consensus:
- #6 COPY IN library: WONTFIX — captured metadata, no universal
  library-to-directory mapping exists. Field costs nothing and is useful
  for library queries.
- #14 SQL DELETE: WONTFIX — DB2 requires FROM; existing FROM pattern
  handles it. Bare DELETE would risk false positives.
- #E OCCURS DEPENDING ON: WONTFIX — runtime sizing concern, not
  structural. The static occurs count is sufficient for indexing.

All 39 findings from 7 Claude reviews now resolved or closed.

* fix(cobol): resolve 48 review findings across 9 review cycles

Ninth deep review resolved all remaining COBOL parser gaps identified
by 5 specialist agents (COBOL expert, architecture strategist,
TypeScript reviewer, security sentinel, code simplicity reviewer).

Fixes (P1 — critical):
- SELECT OPTIONAL now correctly skips OPTIONAL keyword (C1)
- RETURNING params excluded from PROCEDURE DIVISION USING list (C7)
- SORT GIVING no longer captures clause keywords as file names (C5)
- Extract flushSort() helper eliminating 40-line duplication (S2)
- Flush unclosed EXEC blocks at EOF matching SORT/SELECT pattern (S3)
- Guard undefined map key in jcl-processor moduleNames (S1)
- Add MAX_TOTAL_EXPANSIONS=500 to prevent exponential COPY breadth (S4)

Fixes (P2 — important):
- Quote-aware stripInlineComment for | and *> in string literals (C2+C3)
- Fixed-format literal continuation now handles quoted strings (C6)
- PROGRAM-ID detected regardless of division state for siblings (C9)

Fixes (P3 — cleanup):
- EXEC SQL INTO restricted to INSERT INTO to avoid FETCH false-pos (C8)
- Copy expander line numbers fixed from 0-based to 1-based (C11)
- Remove dead code: inInStreamProc, fileIsLiteral, expansionDepth (S7-S10)

Also fixes 8th-review findings: nested program CONTAINS attribution,
multi-PERFORM on same line, INPUT/OUTPUT PROCEDURE IS in SORT,
GO TO DEPENDING ON multi-target, MOVE CORR abbreviation, per-program
procedureUsing ACCESSES edges.

Tests: 145 COBOL tests passing (59 integration + 86 unit)
Benchmarks: CardDemo 12,323 nodes/8,893 edges (7.4s)
            ACAS 14,016 nodes/15,452 edges (9.3s, -9% faster)

* docs(cobol): update documentation for ninth review cycle fixes

Update all 4 COBOL documentation files to reflect the 16 fixes
from the ninth review cycle:

- regex-extraction.md: quote-aware comment stripping, SELECT OPTIONAL,
  RETURNING exclusion, SORT_CLAUSE_NOISE filter, flushSort() helper,
  GO TO multi-target, PROGRAM-ID division-independent detection
- copy-expansion.md: MAX_TOTAL_EXPANSIONS=500 breadth guard, 1-based
  line numbers, removed expansionDepth/warnedCircular param
- deep-indexing.md: GO TO DEPENDING ON, INPUT/OUTPUT PROCEDURE IS,
  MOVE CORR edge reasons, INSERT INTO restriction, literal continuation
- performance.md: updated benchmarks (CardDemo 12,323n/8,893e/7.4s,
  ACAS 14,016n/15,452e/9.3s), COPY breadth guard

* fix(cobol): resolve 10th review findings — nested program edge attribution

Fix 6 findings from the 10th review (PR #498 comment #4132201110):

#A+#F: All CALL/CANCEL/CICS/ENTRY/SQL/SEARCH/file-declaration edges
now use owningModuleId() for nested program attribution instead of
the outer program's parentId. Added helper function owningModuleId()
to centralize the pattern.

#B: Added USING and GIVING to SORT_CLAUSE_NOISE set to prevent MERGE
USING + OUTPUT PROCEDURE from capturing clause keywords as file names.

#C: INPUT/OUTPUT PROCEDURE regex now captures optional THRU/THROUGH
range end paragraph, mirroring RE_PERFORM's THRU support.

#D: scopedCallerLookup fallback now uses programModuleIds.get(pgm)
instead of parentId, so PERFORM/MOVE/GOTO in nested programs with
unresolvable paragraphs fall back to the correct inner module.

#E: pendingProcUsing only set when PROCEDURE DIVISION line is NOT
period-terminated, preventing false USING expectation.

Tests: 145 passing | TypeScript clean

* fix(cobol): resolve 10th review findings — nested program edge attribution

Fix 6 findings from the 10th review (PR #498 comment #4132201110):

#A+#F: All CALL/CANCEL/CICS/ENTRY/SQL/SEARCH/file-declaration edges
now use owningModuleId() for nested program attribution instead of
the outer program's parentId. Added helper function owningModuleId()
to centralize the pattern.

#B: Added USING and GIVING to SORT_CLAUSE_NOISE set to prevent MERGE
USING + OUTPUT PROCEDURE from capturing clause keywords as file names.

#C: INPUT/OUTPUT PROCEDURE regex now captures optional THRU/THROUGH
range end paragraph, mirroring RE_PERFORM's THRU support.

#D: scopedCallerLookup fallback now uses programModuleIds.get(pgm)
instead of parentId, so PERFORM/MOVE/GOTO in nested programs with
unresolvable paragraphs fall back to the correct inner module.

#E: pendingProcUsing only set when PROCEDURE DIVISION line is NOT
period-terminated, preventing false USING expectation.

Tests: 145 passing | TypeScript clean

* fix(cobol): resolve 11th review findings — final nested program + multi-CALL gaps

#1: scopedCallerLookup(null) now uses owningModuleId(lineNum) instead
of parentId, fixing PERFORM/MOVE/GOTO before first paragraph in nested
programs.

#2+#3: CALL and CANCEL extraction now uses matchAll (global flag) to
capture multiple occurrences on the same line. Dynamic CALL/CANCEL
checked independently instead of in else branch.

#4: SORT/MERGE ACCESSES edge IDs now use owningModuleId(sort.line)
instead of parentId for nested program correctness.

#5: preprocessCobolSource free-format detection now uses first 10 lines
(consistent with extractCobolSymbolsWithRegex threshold).

#6: EXCLUDED_PARA_NAMES expanded with DISPLAY, ACCEPT, WRITE, READ,
REWRITE, DELETE, OPEN, CLOSE, RETURN, RELEASE, SORT, MERGE to prevent
false-positive paragraph detection on isolated verbs.

Also removed unused GraphNode import from cobol-processor.ts.

Tests: 145 passing | TypeScript clean

* docs(cobol): deepened full language coverage plan with research findings

3 research agents analyzed Phase 1-2 features and graph value ranking.

Key findings: cobol-call-using is #1 edge type (9.2/10); multi-line
accumulation is dominant challenge; DECLARATIVES is lowest-risk Phase 2
item; SET TO TRUE covers 80-90% of SET usage.

* feat(cobol): implement Phase 1 — high-value data flow edges

4 new extraction features that create new ACCESSES and IMPORTS edges:

1.1: EXEC SQL INCLUDE -> IMPORTS edges with reason 'sql-include'
     Handles unquoted (SQLCA), quoted ('DBRMLIB.MEMBER'), and
     underscored (CUST_TBL_DCL) member names.

1.2: CALL USING parameter extraction -> ACCESSES edges
     Extracts parameters from CALL USING clause, filtering BY/REFERENCE/
     CONTENT/VALUE/ADDRESS/OF/LENGTH/OMITTED keywords. Creates
     'cobol-call-using' ACCESSES edges (graph value: 9.2/10).

1.4: OCCURS DEPENDING ON -> ACCESSES edges with reason 'cobol-depends-on'
     Extended OCCURS regex captures DEPENDING ON field with subscript
     stripping. Creates dependency edge from table to controlling field.

1.5: VALUE clause for standard data items
     Extracts VALUE from data item clauses: quoted strings with type
     prefix (X/N/G/B), ALL literals, numerics (incl negative/decimal),
     and figurative constants. Populates Property node values.

Tests: 145 passing (+2 ACCESSES from CALL USING) | TypeScript clean

* feat(cobol): implement Phase 2 — DECLARATIVES, SET, INSPECT, EXEC DLI

4 new extraction features for error handling, data flow, and IMS/DB:

2.1: EXEC DLI (IMS/DB) -> CodeElement + ACCESSES edges
     Accumulates EXEC DLI blocks like EXEC SQL. Parses DLI verbs
     (GU, GN, ISRT, REPL, DLET, CHKP, SCHD, TERM). Extracts
     SEGMENT, PCB, INTO/FROM, PSB. Creates dli-{verb} ACCESSES
     edges to <ims>:segment Record nodes.

2.2: DECLARATIVES / USE AFTER EXCEPTION -> ACCESSES edges
     Tracks inDeclaratives state. Detects USE AFTER STANDARD
     EXCEPTION ON file-name. Creates cobol-error-handler ACCESSES
     edge from handler section to file Record.

2.3: SET statement -> ACCESSES edges
     Detects SET TO TRUE (80-90% of SET usage) and SET index
     TO/UP BY/DOWN BY. Creates cobol-set-condition / cobol-set-index
     write edges + cobol-set-read for identifier values.

2.4: INSPECT -> ACCESSES edges with multi-line accumulator
     Accumulates INSPECT until period (like SORT). Extracts inspected
     field + tally counters. Creates cobol-inspect-read/write/tally
     edges. Form detection: tallying/replacing/converting/combined.

Preprocessor: 1398 -> 1597 LOC (+199). Tests: 145 passing.

* feat(cobol): implement Phase 3 — completeness fixes

6 partial features fixed to first-class support:

3.1: CALL RETURNING -> ACCESSES write edge (cobol-call-returning)
3.2: SELECT OPTIONAL flag preserved in FileDeclaration + Record node
3.3: ALTERNATE RECORD KEY extraction (matchAll for multiple keys)
3.4: COMMON attribute on nested programs (RE_PROGRAM_ID extended)
3.5: IS EXTERNAL / IS GLOBAL as first-class boolean properties
     (removed usage string hack)
3.6: AUTHOR / DATE-WRITTEN mapped to Module node description

Tests: 145 passing | TypeScript clean

* feat(cobol): implement Phase 4 — INITIALIZE + metadata completeness

4.1: INITIALIZE statement -> ACCESSES write edge (cobol-initialize)
4.2: DATE-COMPILED and INSTALLATION paragraphs extracted and mapped
     to Module node description alongside existing AUTHOR/DATE-WRITTEN

All 4 plan phases complete. Coverage: ~95% (up from 71.9%).
Tests: 145 passing | TypeScript clean

* test(cobol): add 24 unit tests for Phase 1-4 features

Coverage for all new extraction features:

Phase 1 (8 tests):
- EXEC SQL INCLUDE (unquoted, quoted, underscored)
- CALL USING (simple, mixed modes, ADDRESS OF, OMITTED)
- CALL RETURNING
- OCCURS DEPENDING ON
- VALUE clause (string, numeric, figurative constant)

Phase 2 (10 tests):
- EXEC DLI GU/ISRT/SCHD (verb, segment, PCB, INTO, FROM, PSB)
- DECLARATIVES USE AFTER EXCEPTION (single + multiple sections)
- SET TO TRUE, SET index UP BY
- INSPECT TALLYING, INSPECT REPLACING

Phase 3-4 (6 tests):
- SELECT OPTIONAL flag
- ALTERNATE RECORD KEY
- PROGRAM-ID IS COMMON
- IS EXTERNAL / IS GLOBAL booleans
- INITIALIZE extraction
- Full programMetadata (AUTHOR, DATE-WRITTEN, DATE-COMPILED, INSTALLATION)

Total: 168 tests passing (145 + 24 - 1 removed duplicate)

* fix(cobol): use /\r?\n/ split for Windows CRLF compatibility

All 4 COBOL source files now split on /\r?\n/ instead of '\n' to
handle CRLF line endings on Windows. Previously, trailing \r in
lines caused RE_GOTO's $ anchor to fail on multi-line GO TO
DEPENDING ON statements, producing only 1 goto edge instead of 4.

Files fixed: cobol-preprocessor.ts (2 sites), cobol-processor.ts,
jcl-parser.ts, cobol-copy-expander.ts

Tests: 168 passing | TypeScript clean

* fix(cobol): resolve 12th review — dynamic CALL/CANCEL dedup + trailing anchors

#1+#2: Removed incorrect hasQuotedCall/hasQuotedCancel deduplication
guards. RE_CALL_DYNAMIC and RE_CANCEL_DYNAMIC require [A-Z] after
CALL/CANCEL, so they CANNOT match quoted targets — the guards were
both unnecessary and actively harmful, suppressing dynamic CALL/CANCEL
in ON EXCEPTION patterns.

#3+#5: Changed RE_CALL_DYNAMIC and RE_CANCEL_DYNAMIC trailing anchor
from (?:\s|\.) to (?=\s|\.|$) (lookahead). The consuming anchor
failed when the identifier was the last token on a physical line.

Tests: 168 passing | TypeScript clean

* feat(cobol): add CALL accumulator + fix SORT double-statement (#4, #6)

Finding #4: Multi-line CALL USING accumulator
Added callAccum state variable that accumulates CALL statements
spanning multiple physical lines until period or END-CALL is found.
Uses flushCallAccum() to re-extract CALL target + USING parameters
from the full accumulated statement. This fixes the silent loss of
ACCESSES parameter edges when USING appears on lines after CALL.

Finding #6: SORT double-statement on same line
After flushSort(), the code now falls through to re-check the
current line for a new SORT/MERGE start (was previously blocked
by the sortAccum === null check evaluating before flushSort ran).

Also fixed: used non-global regex for CALL detection test to avoid
the classic global regex .test() lastIndex bug.

Tests: 168 passing (+1 ACCESSES from multi-line CALL USING)

* fix(cobol): resolve 13th review — CICS LOAD, USING extraction, file scoping

#1: CICS LOAD unresolved edge no longer silently deleted in second pass.
    Changed narrow cics-link/cics-xctl check to catch-all pattern:
    rel.reason?.startsWith('cics-') && rel.reason.endsWith('-unresolved')

#2: flushCallAccum USING extraction now stops before COBOL statement
    verbs (INSPECT, SEARCH, SORT, MERGE, DISPLAY, ACCEPT, MOVE, PERFORM,
    GO TO, CALL, IF, EVALUATE). Prevents absorbing adjacent statements
    as false USING parameters in legacy pre-COBOL-85 code without END-CALL.

#3: CICS FILE Record nodes now globally-scoped (<cics-file>:FILENAME)
    instead of per-file-scoped. Enables cross-program CICS file access
    analysis, consistent with SQL table scoping (<db>:TABLE).

#4: callAccum pre-check regex now has (?<![A-Z0-9-]) lookbehind to
    prevent false activation on compound identifiers like WS-CALL-FLAG.

Tests: 168 passing | TypeScript clean

* fix(cobol): resolve 14th review — callAccum false paragraph + Area A guard

#1: callAccum continuation lines now check for COBOL statement verb
    starts (GO TO, PERFORM, MOVE, etc.) and paragraph/section headers.
    If detected, the CALL is flushed as-is and the line processed
    normally — prevents false paragraph detection and currentParagraph
    corruption from lines like "WS-ADDR." being treated as paragraphs.

#4: callAccum pre-check now guarded by currentDivision === 'procedure'
    to prevent unnecessary activations in DATA DIVISION.

#5: Fixed-format paragraph detection now rejects lines with >7 leading
    spaces (Area B indentation) as paragraph candidates. Paragraph
    names in fixed-format must start in Area A (col 8-11, max 7 spaces).
    Free-format mode is unaffected.

Tests: 168 passing | TypeScript clean

* fix(cobol): resolve 15th review — callAccum Area A + verb boundary fixes

#A: Column-position-aware paragraph detection in callAccum flush.
#B: inspectAccum early-flush on paragraph/section/verb headers.
#C: Verb boundary \b → (?:\s|$) prevents MOVE-COUNT false flush.

* test(cobol): add 17 edge-case regression tests + fix USING verb boundary

17 new tests covering all recurring review patterns:

Multi-line CALL USING (7 tests):
- Parameters on separate continuation lines (IBM mainframe style)
- No absorption of INSPECT/GO TO/paragraphs following CALL
- END-CALL scope terminator
- Hyphenated identifiers (MOVE-COUNT) not triggering false flush
- Dual quoted+dynamic CALL on same line (ON EXCEPTION)

Nested program attribution (2 tests):
- CALL in inner program within inner line range
- PERFORM before first paragraph has null caller

CRLF compatibility (1 test):
- GO TO DEPENDING ON with \r\n line endings

Area A paragraph detection (2 tests):
- Area B (>7 spaces) rejected; Area A (7 spaces) accepted

SORT/MERGE (1 test): COLLATING SEQUENCE keywords not captured
PROCEDURE USING (2 tests): RETURNING excluded, period-terminated
Comment stripping (1 test): pipe in quoted string preserved
SELECT OPTIONAL (1 test): correct file name, not OPTIONAL keyword

Bug fix: USING extraction regex verb terminators changed from
\bVERB\b to \bVERB(?=\s|$) in flushCallAccum — prevents truncation
on hyphenated identifiers like MOVE-COUNT, PERFORM-LIMIT.

Total: 185 tests passing

* test(cobol): add 32 comprehensive edge-case regression tests

13 new describe blocks covering all extraction features:

- EXEC DLI: no-SEGMENT, multi-line accumulation (2 tests)
- SET: multiple targets, DOWN BY, TO numeric (3 tests)
- INSPECT: CONVERTING, multiple counters, tallying-replacing,
  paragraph flush during accumulation (4 tests)
- DECLARATIVES: no-STANDARD keyword, I-O mode, post-END paragraphs (3)
- COPY REPLACING: pseudotext deletion ==OLD== BY ==== (1 test)
- VALUE: hex literal, negative numeric, ALL literal (3 tests)
- OCCURS: TO range, fixed-size without DEPENDING ON (2 tests)
- Dynamic CALL/CANCEL: end-of-line, multiple CANCELs (3 tests)
- EXEC SQL: INCLUDE skips tables, SELECT INTO host vars, host
  variable extraction (3 tests)
- INITIALIZE: target and caller context (1 test)
- Nested programs: sibling scoping, PROGRAM-ID without ID DIV (2)
- EXEC EOF flush: unclosed EXEC SQL flushed (1 test)
- Multi-PERFORM: IF/ELSE dual PERFORM on single line (1 test)
- IS EXTERNAL: USAGE not polluted by external flag (1 test)

Total: 215 tests passing

* fix(cobol): resolve 16th review — CANCEL in CALL block + USING boundary

#1: flushCallAccum now extracts CANCEL statements from within CALL
    ON EXCEPTION blocks. Adds RE_CANCEL + RE_CANCEL_DYNAMIC matchAll
    passes alongside existing CALL extraction.

#2: Added \bCANCEL(?=\s|$) to USING lookahead regex to prevent CANCEL
    keyword being captured as false USING parameter.

#3: Multi-line CALL start now returns immediately to prevent the CALL
    start line from simultaneously feeding sortAccum/inspectAccum.

#6: Division transitions now flush all active accumulators (callAccum,
    sortAccum, inspectAccum) to prevent state leakage across programs.

Also added CANCEL to callAccum flush trigger verb list.

Tests: 215 passing | TypeScript clean

* refactor(cobol): extract shared verb constants + resolve 17th review

Extract COBOL_STATEMENT_VERBS, RE_STATEMENT_VERB_START, and
RE_USING_PARAMS as shared constants — eliminates 4 duplicated
25-verb regex patterns.

17th review: #1 flushCallAccum before EXEC entry, #2 inspectAccum
verb parity via shared constant.

Tests: 215 passing | TypeScript clean

* test(cobol): replace all fuzzy assertions with exact toBe checks

Replaced 7 toBeGreaterThan/toBeLessThan/toBeGreaterThanOrEqual
assertions with exact toBe values:

- dataItems.length: >= 3 → toBe(3)
- calls.length: >= 1 → toBe(1)
- calls[0].line: range check → toBe(10)
- programs[].startLine/endLine: comparison → exact values
- innerA.endLine/innerB.startLine: comparison → exact values

Also added 11 new edge-case tests (accumulator flush on EXEC/division
transitions, free-format, CANCEL in CALL block, SORT THRU, verb
flush, integration).

226 tests passing — zero fuzzy assertions remain.

* fix(cobol): resolve 19th review + 15 accumulator flush tests

Fixes:
#1: END PROGRAM flushes callAccum/sortAccum/inspectAccum
#2: PROGRAM-ID sibling path flushes all accumulators
#3: Added COMPUTE/ADD/SUBTRACT/MULTIPLY/DIVIDE/STRING/UNSTRING
    to COBOL_STATEMENT_VERBS (now 32 verbs)

Tests (15 new):
- END PROGRAM flush: single + nested programs (2)
- PROGRAM-ID sibling flush (1)
- Arithmetic verb flush: COMPUTE/ADD/SUBTRACT/MULTIPLY/DIVIDE (5)
- String verb flush: STRING/UNSTRING (2)
- Arithmetic not captured as false USING params (1)
- SORT flushed at END PROGRAM (1)
- INSPECT flushed at END PROGRAM (1)
- All with exact toBe assertions (2)

Total: 239 tests passing | Zero fuzzy assertions

* fix(cobol): resolve 20th review — INITIALIZE multi-target + 2 tests

Finding 1: INITIALIZE now captures multiple targets with REPLACING
clause keyword filtering. Regex changed to lazy match stopping at
REPLACING/WITH/period boundary. Targets split on whitespace and
filtered against INITIALIZE_CLAUSE_KEYWORDS set.

Tests (2 new):
- INITIALIZE multi-target: WS-CUSTOMER WS-ORDER WS-LINE-ITEM → 3
- INITIALIZE with REPLACING: only WS-RECORD captured, not keywords

Total: 241 tests passing | TypeScript clean
 2026-03-26 14:03:48 +00:00