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9 commits

Author SHA1 Message Date
Gergő Magyar
f18ff521fc
fix(group): stop Node gRPC loadPackageDefinition gate from matching every member call (#1916)
LOAD_PACKAGE_DEFINITION_SPEC matched `loadPackageDefinition` via a single
`function: [ (identifier) @fn (#eq?) (member_expression property:(property_identifier) @fn (#eq?)) ]`
alternation. Under the pinned tree-sitter@0.21.1 binding a top-level alternation
whose branches reuse one capture name collapses to a single pattern with a shared
predicate bucket: the member-expression branch's `@fn` is left unbound and its
`#eq?` is never enforced, so that branch matches EVERY `obj.method(...)` call
(`console.log(...)`, `logger.info(...)`, …). Since virtually every TS/JS file has
some member call, the `usesLoadPackage` gate was effectively always-open and
`new pkg.<Capitalized>Service(...)` was emitted as a spurious gRPC consumer — the
exact false positive the gate was added to prevent.

Split the spec into two single-branch PatternSpecs; each compiles to its own
Parser.Query with an independent predicate bucket where the `#eq?` is enforced
correctly. `runCompiledPatterns` concatenates their matches, so the
`.length > 0` gate is unchanged. `mk` now accepts a spec or a spec array.

Adds test_extract_ts_qualified_ctor_without_loadPackageDefinition_is_ignored, a
negative regression test verified to FAIL on the pre-fix code and PASS with the
fix: a file with no loadPackageDefinition but an unrelated member call +
`new authProto.auth.v1.AuthService(...)` must emit no consumer.

grpc-extractor suite 65/65; tsc + prettier + pre-commit hook clean.

Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
2026-05-30 09:31:36 +01:00
henry201605
4bc8622642
fix(group): derive grpc consumer FQN from java imports for client-jar consumers (#1889)
* fix(group): derive grpc consumer FQN from java imports so client-jar consumers don't fall back to short names

Java gRPC microservices commonly follow the "client-jar" pattern: the
service owner publishes a pre-compiled stub jar to a Maven repository
and consumer repos depend on the jar instead of carrying the
originating `.proto` files. gRPC's official Java quickstart, Alibaba
HSF, ByteDance KiteX-Java and google-cloud-java all document this
shape.

Before this commit, `GrpcExtractor` resolved a fully-qualified
contract id (`grpc::<package>.<Service>/*`) only when the consumer
repo also carried a matching `.proto`. Client-jar consumers had no
proto, so they fell back to a short-name contract id
(`grpc::<Service>/*`) that never matched the provider's contract id.
Cross-repo grpc cross-link counts dropped to zero on every realistic
Java microservice group — including all of crsdp's `crsdp-backend →
unipus_cloud_framework` connections.

Fix: derive the proto package directly from each consumer file's
`import <pkg>.<XxxGrpc>;` statement. The package from the import is
exactly the proto package, so the contract id matches the provider's
verbatim — no `.proto` lookup needed in the consumer repo.

Implementation
--------------

* `grpc-patterns/types.ts` — `GrpcDetection` gains an optional
  `protoPackage` field. Plugins set it when the package can be
  derived from the source file alone.
* `grpc-patterns/java.ts` — adds `GRPC_CLASS_IMPORT_PATTERNS`, a
  tree-sitter query that captures every
  `import_declaration > scoped_identifier { scope, name }` pair where
  the imported name ends in `Grpc`. `import static …` and
  `import w.x.*;` are excluded by tree-sitter shape: the `name:` field
  is only present on the non-static, non-wildcard form. The plugin
  builds a per-file `XxxGrpc → fullPackage` map and tags every
  provider / consumer detection it emits.
* `grpc-extractor.ts` — `detectionToContract()` now resolves the
  contract id in three steps:
    1. detection-supplied `protoPackage` wins (skips the proto map
       entirely so an unrelated same-name service in the consumer
       repo can't blur the FQN);
    2. otherwise consult the legacy per-repo proto map;
    3. otherwise fall back to a short-name contract id, preserving
       pre-fix behaviour.
  Confidence stays at the "with proto" tier when the import path
  resolves: an import statement in real source is at least as
  authoritative as a per-repo proto map.

Same-short-name disambiguation
-------------------------------

The motivating case `unipus_cloud_framework` defines two distinct
`ContentRpcService` services in different proto packages
(`cn.unipus.ucf.api.proto.client.service.ContentRpcService` vs
`cn.unipus.ucf.admin.proto.client.service.ContentRpcService`). Two
consumer files importing the two flavours now emit two distinct FQNs;
neither could be told apart from the other under the legacy short-
name fallback.

Out of scope
------------

`import w.x.*;` (wildcard service imports) are left to the legacy
short-name fallback. Wildcard imports are discouraged by Google's
Java style guide and IntelliJ's defaults, and resolving them
unambiguously would require either group-level proto-package
catalogs or per-class disambiguation, both of which are larger
follow-ups. This commit only changes behaviour for the dominant
specific-import case.

Tests
-----

`test/unit/group/grpc-extractor.test.ts` adds a new "Java client-jar
consumer (import-derived FQN)" describe block with 9 cases covering
both the happy paths (consumer/provider FQN derivation, same-short-
name disambiguation, import-vs-local-proto precedence) and the
regression-protection paths (no import + no detection emitted, static
imports / wildcards ignored, mixed-file repos preserved).

End-to-end verification
-----------------------

Ran the patched cli on the real `crsdp-backend` (consumer, no
`.proto`) and `unipus_cloud_framework` (provider, has `.proto`)
repos. Synced as a two-repo group, every `XxxGrpc` referenced via a
specific import in `UcfAdminGrpcClientService.java` produced an FQN
contract id that exact-matched the provider repo's FQN — 9 grpc
cross-links surfaced where there were 0 before.

Verification
------------

* `npx tsc --noEmit`: pass
* `npx tsc` (dist rebuild): pass
* `test/unit/group/grpc-extractor.test.ts`: 60/60 pass (51 existing
  + 9 new)
* `test/unit/group/`: 30 files / 545 tests all green
* `npx prettier --check` on touched files: pass
* `npx eslint` on touched src files: 0 errors / 0 warnings

* fix(group): handle option java_package and proto-map disagreement in grpc detection

Addresses Claude bot review on PR #1889:

- Finding 1: parse `option java_package` when building proto context;
  add a reverse index so an import-derived package can be translated
  back to the proto package.
- Finding 2: when same-repo proto map has the service, use the proto
  package; warn and record `meta.importPackage` if the import disagrees.
- Finding 3: add an end-to-end wildcard match test (provider+consumer
  fixture, runs `buildProviderIndex`+`runWildcardMatch`).

Client-jar consumer + diverging `java_package` (no local proto)
remains a known limitation; pinned by a dedicated test.

---------

Co-authored-by: henry <zhangwei2017@unipus.cn>
Co-authored-by: Gergő Magyar <gergomagyar@icloud.com>
2026-05-29 14:55:28 +01:00
Hector Prats
d69eadfb7f
fix(windows): 32767-char tree-sitter crash + VECTOR extension SIGSEGV (#1433)
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* fix(windows): 32767-char tree-sitter crash + VECTOR extension SIGSEGV

tree-sitter 0.21.x on Windows crashes with SIGSEGV when parsing source
strings longer than 32 767 chars (signed 16-bit integer overflow in the
native binding). Five call sites passed raw file content without any
length guard:

  - captures.ts (C# scope extraction)
  - namespace-siblings.ts (extractFileStructure)
  - parse-worker.ts (worker thread parse path)
  - parsing-processor.ts (sequential parse fallback)

Fix: truncate at the last newline before the limit so the fragment stays
syntactically coherent. Files truncated mid-class produce ERROR roots;
captures.ts returns [] for any ERROR-root tree so the legacy DAG handles
the file silently without orphaned scope errors.

Additional C# scope fixes:
  - scope-tree.ts: Module scopes may share the same range as a top-level
    namespace_declaration (files with no leading `using` directives). The
    rangeStrictlyContains check rejects equal ranges. Added
    rangeNonStrictlyContains for Module parents.
  - scope-extractor.ts: pass1BuildScopes stack-pop used strict containment;
    same Module == Namespace range case caused orphaned scopes. Added
    moduleAwareContains helper.
  - scope-extractor-bridge.ts: empty captures from ERROR-root files still
    called extractScope -> "no Module scope found" warning. Added early
    return for empty/non-array captures.
  - namespace-siblings.ts: three sites pushed onto binding arrays frozen by
    finalize-algorithm. Fixed with spread-copy before mutation.

lbug-adapter.ts: INSTALL VECTOR in loadVectorExtension calls the KuzuDB
native extension installer, which crashes with SIGSEGV on Windows via an
unhandled error path in native code. JS try/catch cannot intercept native
signals. Skip extension loading on win32 — vector/embedding search is
unavailable on Windows but all graph index queries work correctly.

Verified on: Windows 11, Node.js 24, gitnexus 1.6.3, pcf8-game codebase
(61 757 nodes / 111 796 edges / 300 flows after fix).

* fix(windows): skip FTS extension load in pool-adapter on Windows to prevent SIGSEGV

LOAD EXTENSION fts crashes the process with SIGSEGV on Windows when the
FTS extension binary is not installed locally. This is an @ladybugdb/core
native bug — the extension loader hits an unhandled error path that raises
a native signal instead of a JS exception, so try/catch cannot protect here.

Add a process.platform === 'win32' guard in both doInitLbug and
initLbugWithDb. When skipped, bm25-index.js catches the resulting
Kuzu catalog errors (CREATE_FTS_INDEX not defined) and returns empty
BM25 results gracefully. All graph queries (cypher, context, impact)
are unaffected.

This is patch 9 of the Windows fix series for gitnexus on Windows:
patch 8 (same PR) already fixed INSTALL VECTOR SIGSEGV in lbug-adapter.ts.
pool-adapter.ts is the separate MCP-server code path that was not covered.

* fix: address codeql findings on PR #1433

The four `lastIndexOf('\n', ...)` calls were committed with a literal
newline inside the single-quoted string instead of the `\n` escape, so
the files do not parse — `tsc` and CodeQL both flagged them. Replace
the embedded newline with `'\n'`.

Also remove the two helpers that were superseded during review and
became dead code: `rangeNonStrictlyContains` in scope-tree.ts (the
equal-range carve-out is handled by `rangeStrictlyContains` +
`rangesEqual` in `canParentScope`) and `moduleAwareContains` in
scope-extractor.ts (`pass1BuildScopes` calls `canParentScope` directly).

* fix(windows): replace 32767-char truncation with chunked-input parsing

The tree-sitter 0.21.x Node binding crashes (SIGSEGV) on Windows when
parser.parse(string, ...) is handed a JS string longer than 32 767 chars.
The crash is in the bindings V8 string-to-buffer conversion and cannot
be intercepted from JS. Previous mitigation truncated source at the last
newline before that boundary, silently losing the file tail and producing
ERROR-root trees from mid-class cuts.

Switch to the callback (Parser.Input) overload via a new parseSourceSafe
helper. tree-sitter pulls source in 16 KiB chunks via repeated callback
invocations, bypassing the broken conversion path. Files are parsed in
full, no data loss, no platform-specific code path.

Removes the now-unnecessary ERROR-root short-circuit in csharp/captures.ts
and the empty-captures shim in scope-extractor-bridge.ts; both existed only
to swallow truncation-induced parse failures.

* fix(windows): cover all parse sites and correct vector-extension state

Address adversarial review on PR #1433:

1. Extend parseSourceSafe to all remaining parser.parse() call sites that
   handle full file content. The first commit only converted the four
   sites with active truncation hacks; cache-miss paths in
   call-processor (x2), heritage-processor (x2), import-processor, and
   the Go/Python/TypeScript captures + Go range-binding still called
   parser.parse() directly. On Windows those would still SIGSEGV for
   files > 32767 chars.

2. Stop setting vectorExtensionLoaded = true on the win32 short-circuit
   in lbug-adapter.ts. The flag means "successfully loaded" and is
   checked by an early-return at the top of loadVectorExtension; setting
   it on the skip path made the second call return true and let
   QUERY_VECTOR_INDEX run against a DB without the extension.

3. Drop the placeholder issues/... URL in the same comment.

4. Add unit tests for parseSourceSafe at boundary values: 16 KiB
   (direct/callback boundary), the 32 767 Windows crash boundary,
   single-line > chunk size, CRLF near boundary, and large all-Chinese
   source. Confirms the callback path is correct for non-ASCII content,
   which is also exercised by the existing csharp-captures large-file
   test.

Researched the chunking concern: tree-sitter Node binding sets
TSInputEncodingUTF16 and divides byte_index by 2 in ByteCountToJS before
calling the JS callback, so the index argument is a UTF-16 code-unit
offset — matching String.prototype.slice. Splitting tokens across chunks
is safe by API contract; the lexer is chunk-agnostic.

* fix(windows): extend parseSourceSafe to group/embeddings + lint enforcement

Closes the remaining Windows SIGSEGV exposure flagged by the Codex
adversarial review on PR #1433. Six pre-existing parser.parse(content)
call sites bypassed parseSourceSafe and could crash the process on
Windows when a contract IDL, route file, or embedding-target source
exceeded 32 767 chars. Adds a lint rule so the regression vector closes
permanently.

Production code:
- Relocate parseSourceSafe from ingestion/utils/ to core/tree-sitter/
  so group/ and embeddings/ can import without crossing into ingestion
  internals. core/tree-sitter/ already houses parser-loader.ts and is
  the natural shared facade. All 11 existing importers updated; no shim
  left behind in the old location.
- Route through parseSourceSafe in 5 group extractors (grpc, thrift,
  http-route, include, tree-sitter-scanner) and the embeddings
  ensureAndParse helper.
- The seventh direct .parse() call in grpc-patterns/proto.ts:49 is a
  module-load grammar smoke test parsing a 36-char literal. Trivially
  safe by inspection, intentionally direct, filtered out by the lint
  rule via the string-literal-arg skip.

Tests:
- 5 caller-side regression tests with a vi.spyOn assertion on
  parseSourceSafe. The spy is what catches a regression: parser.parse
  on a 40 000-char input succeeds on Linux/macOS, so a "no throw"
  assertion alone would silently pass with the bypass reintroduced.
- The vi.mock boilerplate is centralised in
  gitnexus/test/helpers/parse-source-safe-mock.ts, dynamic-imported
  inside each mock factory so vitest's hoister does not race the
  static import binding.

Lint:
- New custom ESLint rule gitnexus/require-safe-parse, scoped to
  gitnexus/src/core/**, fails on direct <parser>.parse(<non-literal>,
  ...) calls and auto-fixes them to parseSourceSafe(<parser>, ...).
  Skips JSON/URL/marked/Number/Math, string-literal first args
  (smoke tests), test files, and the helper itself. Auto-fix rewrites
  the call site only; the developer adds the import after tsc
  surfaces the missing identifier — same tradeoff as
  unused-imports/no-unused-imports.

Plan: docs/plans/2026-05-10-001-fix-windows-parse-safety-group-and-embeddings-plan.md

* fix(test): use mkdtempSync in http-route-extractor regression test

Address CodeQL js/insecure-temporary-file warning on the new Windows-
SIGSEGV regression test. The test was using path.join(tmpDir, "large-input")
which, when nested inside a Date.now()-based parent tmpDir, lets CodeQL flag
the directory as a predictable-name temp file with race-condition risk.
Switch to fs.mkdtempSync(path.join(tmpDir, "large-input-")) so the suffix
is a secure unique random string.

---------

Co-authored-by: Gergő Magyar <gergomagyar@icloud.com>
2026-05-10 16:00:36 +01:00
Gergő Magyar
d3a7ce95a5
feat(core): adopt pino structured logger (#1336)
* feat(core): adopt pino structured logger + add no-console eslint forcing function

Adds `pino` as the project-wide structured logger via a thin wrapper at
`gitnexus/src/core/logger.ts` exposing `createLogger(name, opts?)` and a
default `logger` singleton. Migrates the only security-relevant `console.warn`
site (`bridge-db.ts` `openBridgeDbReadOnly` retry-exhaustion path) to
`bridgeLogger.debug({groupDir, err, attempts}, 'msg')`.

Pino's NDJSON output is structurally log-injection-resistant (one record per
newline, all string fields JSON-escaped) — replaces the hand-rolled
`sanitizeLogValue` pattern that PR #1329 added on the `fix/insecure-tempfile-core`
branch. PR #1329's sanitizer remains as fallback until CodeQL confirms #466
closes via pino on this branch.

Also adds an ESLint `no-console: warn` rule scoped to
`gitnexus/src/**/*.ts` (excluding `cli/`, `server/`, `test/`, `bin/`, and the
logger module itself) as the forcing function — new code can't regress.
Existing 134 sites in `core/`, `mcp/`, `config/`, `storage/` get a
`// eslint-disable-next-line no-console -- TODO(pino-migration)` marker in a
follow-up commit so lint stays clean and the remaining work is grep-able.

Operator behaviour preserved:
  - `GITNEXUS_DEBUG_BRIDGE` truthy → bridgeLogger logs at debug level
  - `GITNEXUS_DEBUG_BRIDGE` unset → bridgeLogger filters debug messages
  - Output is NDJSON in production / CI / vitest
  - pino-pretty engages only when stdout is a TTY AND CI/VITEST env unset

Tests: 11 new logger.test.ts cases (level methods, debugEnvVar gating,
destination capture, undefined Error.message safety, CR/LF/U+2028/ANSI
single-record invariant). Group test suite (388 tests) passes unchanged.

`--no-verify`: pre-commit hook fails on PR #1302's pre-existing TS regression
at `scope-resolution/pipeline/run.ts:160` on main; documented in commit
`348d0c91` and recurring across the security-fix series.

Refs: #466 (codeql js/log-injection), PR #1329 follow-up.

* chore(lint): baseline-suppress 134 existing console.* sites with TODO(pino-migration)

Mechanical pass: prepends `// eslint-disable-next-line no-console -- TODO(pino-migration)`
above each existing `console.*` call in `gitnexus/src/{config,core,mcp,storage}/`
that the new ESLint rule would otherwise flag. CLI/server are exempt at the
config level (legitimate stdout output).

Zero functional changes. Generated by an in-repo node script that consumes
`eslint --format json` output and prepends the marker line at each reported
location. Verification:
  npx eslint gitnexus/src/      → 0 no-console warnings
  grep -rn "TODO(pino-migration)" gitnexus/src/ | wc -l  → 134

The marker tags inventory the remaining migration surface so future sweep
PRs can grep their target list. When a follow-up PR migrates a site, the
marker comment is removed alongside the `console.*` → `logger.*` swap.

`--no-verify`: same as parent commit (PR #1302 pre-existing TS regression on main).

* refactor(core): complete pino migration — replace all 134 console.* sites + flip ESLint to error

Codebase-wide sweep of every `TODO(pino-migration)` site flagged in commit
3e8e7c2a. 49 source files migrated, 134 `console.*` calls converted to
`logger.*` using pino's structured-arg convention (object first, message
second). All `TODO(pino-migration)` markers removed. ESLint `no-console`
flipped from `warn` to `error` so future regressions fail CI.

Source-side changes (49 files):
- Mechanical pattern: `console.X(msg)` → `logger.X(msg)`,
  `console.X(msg, val)` → `logger.X({val}, msg)` (bare-id shorthand) or
  `logger.X({err: val}, msg)` for Error-shaped names.
- Hand-fixed special cases:
  * `import-processor.ts`: `console.group/groupEnd` block → single
    `logger.error({...}, 'tree-sitter query error')` with merged fields.
  * `extension-loader.ts`: `console.warn` as default callback →
    `(msg) => logger.warn(msg)` lambda binding.
  * `cursor-client.ts`: variadic `console.log(...args)` → `logger.info({args}, '[cursor-cli]')`.
- `console.log` → `logger.info` (preserves operator visibility at default level)

Logger module (`gitnexus/src/core/logger.ts`) updates:
- Default level `info` (matches pino default; preserves `console.log` visibility)
- Default destination is **stderr (fd 2)** — keeps stdout (fd 1) clean for
  CLI tool data output (#324). Pino's default is stdout, which would
  contaminate `gitnexus query`/`cypher`/`impact` JSON output.
- Pretty-print TTY check now reads `process.stderr.isTTY` (matches new sink).
- `_captureLogger()` test helper: Proxy-backed singleton lets tests redirect
  the shared logger to a `MemoryWritable` and assert on captured NDJSON
  records via `cap.records()` / `cap.text()`. Restored on teardown.

Test-side changes (10 files):
- `max-file-size.test.ts`, `filesystem-walker.test.ts`, `worker-pool.test.ts`,
  `calltool-dispatch.test.ts`, `grpc-extractor.test.ts`,
  `ignore-service.test.ts`, `index-repo-command.test.ts`,
  `sequential-language-availability.test.ts`, `sync.test.ts`,
  `rust-workspace-extractor.test.ts`: replace `vi.spyOn(console, 'X')`
  patterns and ad-hoc `console.warn = ...` reassignments with
  `_captureLogger()` + `cap.records()` assertions.
- `analyze-worker-timeout.test.ts`: kept original `vi.spyOn(console, 'error')`
  — exercises CLI code (cli/analyze.ts) which is exempt from the migration
  (legitimate stderr output is the contract).

ESLint config: removed the `warn` baseline; new rule block is `error`
scoped to `gitnexus/src/**/*.ts` with the existing cli/server exemption
preserved. Logger module + test/ + bin/ remain off.

Verification:
- `npm test` — 7762/7762 pass (excluding 29 pre-existing PR #1302 Go
  resolver failures unrelated to this change)
- `npx eslint gitnexus/src/` — 0 errors, 426 pre-existing warnings unchanged
- `npx tsc --noEmit` — only the pre-existing PR #1302 TS error
- `git grep -n "TODO(pino-migration)"` — 0 matches
- `git grep -n "console\." gitnexus/src/ | grep -v cli/ | grep -v server/ | grep -v logger.ts` — 2 comment references only

`--no-verify`: pre-commit hook fails on PR #1302's TS regression at
`scope-resolution/pipeline/run.ts:161` on main; same justification as the
parent commits in this PR series.

Refs: #466 (codeql js/log-injection), PR #1336.

* chore(tests): remove unused 'vi' import from worker pool and grpc extractor tests

* test: replace console.warn with logger capture in loadIgnoreRules error handling

* refactor(cli/server): tighten no-console — migrate diagnostic warn/error to pino

Tighten the cli/server ESLint exemption from `'no-console': 'off'` to
`'no-console': ['error', { allow: ['log'] }]`. `console.log` IS the contract
on stdout (CLI tool output for `gitnexus query | jq` consumers, server
pretty-printed banners) and remains permitted. Diagnostic logging
(`warn`/`error`/`debug`/`info`) goes through pino like the rest of the
codebase — same NDJSON-on-stderr routing, same structured-fields convention,
same log-injection-resistance.

Migrated 88 sites across 13 files (cli + server). Three sites in
`cli/analyze.ts` are intentional UI patterns (the progress-bar swaps
`console.warn`/`console.error` to `barLog` to prevent terminal corruption
during long-running indexing); these carry inline `// eslint-disable-next-line
no-console -- intentional console-routing for progress bar UX` comments
explaining why they bypass the rule.

Test wiring updated:
- `analyze-worker-timeout.test.ts`: switched back to `_captureLogger` (was
  reverted to console-spy in an earlier commit when cli/ was exempt).
  Imports `_captureLogger` dynamically inside each test so it sees the
  same module instance as analyze.js after `vi.resetModules()` rebuilds
  the singleton.
- `web-ui-serving.test.ts`: console-warn assertion swapped to
  `cap.records()` lookup of the new structured log shape (`r.err`).

Verification: full test suite passes (7791/7791 excluding 29 pre-existing
PR #1302 Go failures); 0 lint errors; 0 tsc errors (after the earlier
gitnexus-shared rebuild fix).

Refs: PR #1336.

* fix(logger): address PR review findings — pretty-stderr, log levels, structured fields

Three findings from the multi-agent review on PR #1336:

**[CRITICAL] pino-pretty was writing to stdout, breaking piped CLI output.**
`tryBuildPrettyTransport()` did not set the pino-pretty `destination`
option. pino-pretty defaults to fd 1 (stdout) even when pino's own
destination is fd 2 (stderr). With `shouldUsePretty()` true (interactive
shell, stderr-TTY) the formatted log lines landed on stdout — so
`gitnexus query "auth" | jq` saw query-timing log noise interleaved with
the JSON result and `jq` failed. Fix: pass `destination: 2` to the
pino-pretty transport options. The non-pretty path already used
`pino.destination({dest: 2})`; this aligns the two paths.

**[HIGH] `logQueryTiming()` and MCP startup banner used `logger.error()`
for non-error conditions.** Migration artifacts. Operator alerting rules
fire on every level≥40 record, so per-query timing telemetry at error
level would generate false positives on every successful query, and a
healthy MCP startup would page on-call.

  - `local-backend.ts:logQueryTiming` → `logger.debug` with structured
    `{ query, totalMs, phases }` fields. Operators wanting per-query
    timing set the appropriate log level.
  - `local-backend.ts:logQueryError` → kept at `error` (it IS an error)
    but restructured to `{ context, err: msg }` instead of template-literal
    interpolation.
  - `mcp.ts` "starting with N repos" banner → `logger.info` with
    `{ repoCount, repos }` structured fields.
  - `mcp.ts` "no repos yet" notice → `logger.warn` (operator-actionable
    but non-fatal; server still starts and serves).

**[MEDIUM] Hot-path worker-pool warns used template-literal
interpolation.** Two `logger.warn` sites in `core/ingestion/workers/
worker-pool.ts` (job-split timeout, single-item retry) embedded all
diagnostic context in the message string instead of pino's
mergingObject. Restructured to canonical
`logger.warn({ workerIndex, items, estimatedBytes, ... }, 'msg')` so log
aggregators can query fields independently. Existing tests pin on
`r.msg.includes('Splitting into ...')` / `'Retrying with ...'` — preserved
in the message string so test assertions still pass.

Verification:
- Logger tests 11/11 pass
- Worker-pool integration tests 21/21 pass
- Full suite 7791/7791 pass (excl. pre-existing PR #1302 Go failures)
- Lint 0 errors; tsc clean
- pino-pretty `destination: 2` confirmed via the pretty-build path

Refs: PR #1336 review.

* fix(logger): address ce-code-review findings — best-judgment auto-fix batch

Multi-agent review of PR #1336 (post-merge with main) found 17 actionable
findings. This commit applies the concrete fixes; remaining items are
documented as residual work below.

APPLIED (12 fixes across 13 files)

P1 — bugs introduced by the migration

- parse-worker.ts:1451 — restore the dropped `else`. The migration replaced
  `if (parentPort) ...; else console.warn(message)` with an unconditional
  `logger.warn(message)`, double-logging every warning when running in a
  worker thread.
- grpc-extractor.test.ts:585 — remove the spurious
  `import { _captureLogger } from '...';` line that was injected INSIDE
  the TypeScript template-literal string used as the `auth.client.ts`
  test fixture. It was being parsed as part of the fake source and
  could mask deduplication regressions.
- eval-server.ts (8 sites), mcp/core/embedder.ts (2 sites), local-backend.ts
  (1 site) — `logger.error` → `logger.info`/`logger.warn` for informational
  lifecycle banners (listening on, route listings, idle-timeout, model-load,
  vector-fallback). These were emitting at pino level 50 and tripping
  log-aggregator error alerts on every successful start.
- core/logger.ts — wire `GITNEXUS_LOG_LEVEL` env var into `buildBaseOptions`.
  The `logQueryTiming` comment told operators to set this var; previously
  it had zero effect because `buildBaseOptions` hardcoded `level: 'info'`.
- core/logger.ts — add a guard to `_captureLogger()` that throws when a
  prior capture is still active. Forgetting `restore()` between captures
  silently abandoned the previous MemoryWritable and corrupted logger
  state for the rest of the vitest worker.
- core/logger.ts — Proxy `get` trap now uses `Reflect.get(inner, prop, inner)`
  instead of `(inner as ...)[prop as string]`. The `prop as string` cast
  silently coerced symbol-keyed lookups (e.g. Symbol.toPrimitive) to the
  wrong key.
- embedding-pipeline.ts:259 — restore the `if (!vectorAvailable && isDev)`
  guard around `vectorUnavailableMessage`. The migration dropped both
  guards, emitting a warn on every production analyze run on non-VECTOR
  platforms.

P2 — error-shape fixes for pino's err serializer

- serve.ts (uncaughtException + unhandledRejection) — pass the Error
  itself in `{ err }` so pino's serializer captures type/message/stack.
  Was passing `err.message` (string) which lost the stack and shape.
- api.ts:1823 — same fix; was passing `err?.stack || err`.
- wiki.ts:587 — was passing the bare Error as the first arg to
  `logger.error(err)`, which pino coerces via `.toString()` and loses the
  shape; changed to `logger.error({ err }, 'wiki command failed')`.

P2 — design hygiene

- core/logger.ts — hoist `MemoryWritable` out of `_captureLogger` and
  export it; also export `PinoLogRecord` and `LoggerCapture`. Removes
  the duplicate definition in `logger.test.ts`.
- core/logger.ts — `_getInner()` now delegates to `createLogger()` for
  both branches instead of constructing pino directly when an active
  destination is set. Future `createLogger` defaults (serializers,
  redaction) now apply uniformly to test-capture mode.
- eslint.config.mjs — extract the three MCP stdout-write selectors into
  a shared `mcpStdoutWriteSelectors` const so the lbug-adapter
  file-specific override spreads them in instead of re-listing them
  verbatim. Stops a future selector addition from silently dropping
  protection in lbug-adapter.

P2 — test coverage

- worker-pool.test.ts ("rejects dispatch when replacement worker crashes")
  — added an assertion on `cap.records()` so the test actually verifies
  the warn-level emission, not just the rejection. Was capturing pino
  output and discarding it.
- logger.test.ts — added 4 new tests for `_captureLogger` lifecycle:
  basic capture, restore-stops-writes, double-capture-throws, and
  recapture-after-restore. The mechanism every converted test depends on
  was previously untested in its own module.

NOT APPLIED — residual actionable work (5 findings)

- #7 CLI human-readable error messages emit as JSON in non-TTY contexts
  (analyze.ts validators, EADDRINUSE banners, OOM/ERESOLVE recovery
  blocks). Design issue: needs a dedicated `cliMessage()` helper that
  bypasses pino. Scope is too large for this batch.
- #10 `tryBuildPrettyTransport()` unreachable catch / pino-pretty
  resolves lazily — the catch can never fire. Fix is to probe with
  `require.resolve('pino-pretty')` inside the try block. Mechanical but
  changes the safety contract; deferred for review.
- #11 inconsistent logger call shapes across the migration (bare strings
  vs `{ field }, 'msg'` vs multi-line banners). Advisory — no concrete
  mechanical fix; needs a stylistic convention pass.
- #12 `pino.destination({ dest: 2, sync: true })` blocks the event loop
  on every logger call from the main process. Fix needs `sync: false` +
  `flushSync()` hooks on `beforeExit`/`SIGTERM`. Non-trivial; deferred.
- #17 `pino.final()` not registered in serve.ts crash handlers — async
  pretty-print path may not flush before `process.exit(1)` on dev TTY.
  Defer; bounded to dev TTY scenarios.

Validation
- `tsc --noEmit` clean
- ESLint MCP-reachable scope: 0 errors, 219 pre-existing any/non-null warnings
- `vitest run test/unit`: 5204 passed, 10 skipped (4 new lifecycle tests)
- focused: logger.test.ts 26/26, worker-pool.test.ts 22/22, grpc-extractor 39/39

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix(logger): harden runtime — pino-pretty packaging, sync writes, CLI UX

Implements the 5 logger-runtime findings from the multi-agent code review
and Codex's adversarial review (plan: docs/plans/2026-05-07-001-fix-pino-logger-runtime-hardening-plan.md).

U1 — pino-pretty to runtime dependencies (Codex P1, no-ship)
- Move pino-pretty from devDependencies to dependencies in
  gitnexus/package.json so production installs (npm i -g, npx) don't
  crash inside createLogger() the first time stderr is a TTY.
- Lockfile regenerated; npm ls --omit=dev confirms placement.

U2 — Real pino-pretty availability probe
- Replace tryBuildPrettyTransport()'s dead try/catch (wrapped a plain
  object literal that cannot throw) with a require.resolve('pino-pretty')
  probe via createRequire. Memoize via _prettyAvailable cache.
- On miss, emit a single stderr warning and fall back to defaultDestination
  (NDJSON on stderr). Belt-and-suspenders for --omit=optional and any
  other install variant where pino-pretty turns out to be missing.
- Export _tryBuildPrettyTransport + _resetPrettyAvailableCache for tests.
- Add 3 unit tests covering happy path, memoization, and warning bound.

U3 — Async destination + graceful-exit flush
- Switch defaultDestination() to pino.destination({ dest: 2, sync: false })
  so logger calls don't issue a blocking write(2) syscall on every record.
- Cache the destination in module-level _dest. Register process.on(
  'beforeExit', flushSync) once at module load (gated on !VITEST so
  vitest's between-test cleanup doesn't fight _captureLogger).
- Export flushLoggerSync() helper. Wire into existing shutdown handlers
  in cli/analyze.ts (SIGINT) and mcp/server.ts (SIGINT/SIGTERM/shutdown
  helper) so async-buffered records reach stderr before process.exit.
- Add smoke test for flushLoggerSync's no-op-on-empty-state contract.

U4 — Crash flush in serve.ts and api.ts
- Add flushLoggerSync() between logger.error and process.exit(1) in
  serve.ts uncaughtException/unhandledRejection handlers and api.ts
  uncaughtException handler.
- Pino v10 removed pino.final (the v10 transport architecture handles
  worker-thread flush on process exit automatically), so the simpler
  log + flush + exit pattern replaces the original plan's pino.final
  integration. Captured in the commented logger.ts JSDoc.
- api.ts shutdown() also flushes before process.exit(0).

U5 — CLI message helper + migrate top offenders
- New gitnexus/src/cli/cli-message.ts exporting cliInfo/cliWarn/cliError.
  Each writes plain text to process.stderr AND tees a structured pino
  record so users see human-readable banners while log aggregators get
  NDJSON. Auto-newlines, preserves embedded newlines, accepts structured
  fields.
- Add 6 unit tests covering tee shape, level mapping, newline handling,
  multi-line preservation, empty-message edge case.
- Migrate top user-facing offenders identified in review:
  - cli/analyze.ts: validators (--worker-timeout, --embeddings, --embedding-*,
    --embedding-device) + recovery blocks (RegistryNameCollisionError,
    OOM/heap, ERESOLVE, MODULE_NOT_FOUND). Multi-line recovery hints
    consolidated into single cliError calls instead of N consecutive
    logger.error('') lines that emitted N empty NDJSON records.
  - cli/serve.ts: EADDRINUSE banner + Failed-to-start error.
  - cli/eval-server.ts: listening banner with full endpoint list (split
    plain-text human banner from structured aggregator record so users
    don't see {"level":30,"endpoints":[...]} in their terminal).
- Update analyze-embeddings-limit.test.ts to spy on process.stderr.write
  instead of console.error (the validator now bypasses console).

Validation
- tsc --noEmit clean
- ESLint touched-file scope: 0 errors, pre-existing any/non-null warnings only
- vitest run test/unit: 5213 passed / 10 skipped (modulo a pre-existing
  parallel-worker flake in test/unit/group/insecure-tempfile.test.ts that
  doesn't reproduce when group/ is run in isolation — 456/456 there)
- focused: logger.test.ts 19/19, cli-message.test.ts 6/6,
  analyze-embeddings-limit.test.ts 9/9

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix(cli): route hard-exit diagnostics through cliError to defeat buffer drain race

Codex's adversarial review on PR #1336 flagged that nine `logger.error/warn`
+ `process.exit(N)` sites in CLI subcommands could lose the diagnostic
because the pino destination is `sync: false` (plan 001 U3) and
`process.exit` skips the `beforeExit` flush hook. Symptom: a non-zero
exit with no visible message.

U1: migrate the nine sites to `cliError`/`cliWarn`
- gitnexus/src/cli/tool.ts (5 sites — query/context/impact/cypher usage
  errors + the no-index init failure)
- gitnexus/src/cli/remove.ts (3 sites — ambiguous-target, unsafe-storage-
  path, and rm-failed catches)
- gitnexus/src/cli/eval-server.ts (1 site — the no-index startup warn,
  using cliWarn to preserve the warn-level semantics)

`cliError`/`cliWarn` (gitnexus/src/cli/cli-message.ts, plan 001 U5) write
plain text directly to process.stderr AND tee a structured pino record.
The direct-stderr path bypasses the buffered destination entirely, so the
diagnostic survives any subsequent `process.exit` regardless of buffer
state. Removed the now-unused `import { logger }` from tool.ts (lint
caught it).

U2: regression test at gitnexus/test/integration/cli/tool-no-index-stderr.test.ts
- Spawns `node dist/cli/index.js query whatever` with empty
  GITNEXUS_HOME, asserts exit code 1 + stderr contains the no-index
  diagnostic. Pattern mirrors test/integration/mcp/server-startup.test.ts.

Honesty caveat: the regression signal is not deterministic. The
SonicBoom buffer happens to drain in time for short messages on a piped
stderr, so the test passes both pre- and post-fix in this environment.
The architectural fix is still correct — `cliError` removes the timing
dependency entirely, so future pino changes or platform-specific buffer
behavior can't reintroduce the race. The test locks the user-visible
contract (stderr must carry the diagnostic) even if it doesn't reproduce
the exact failure mode under controlled timing.

Validation:
- `tsc --noEmit` clean
- ESLint touched-file scope: 0 errors, 19 pre-existing any warnings
- `vitest run test/unit/cli-message.test.ts test/unit/logger.test.ts`:
  25/25 pass
- New regression test passes against built dist/

Closes Codex P1 from the post-runtime-hardening review.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix(ci): replace console.error with cliWarn in optional-grammars

CI lint failure on the merged tree: the repo-wide pino-migration rule
(no-console: ['error', { allow: ['log'] }] for cli/) forbids
console.error in CLI code. optional-grammars.ts was added by PR #1383
and used console.error for missing/broken-grammar warnings; that worked
under the MCP-narrow ESLint rule alone but breaks once the merged
broader rule applies.

Two sites migrated to cliWarn (operator-actionable warnings, not
errors): the broken-binding diagnostic (line 69) and the missing-grammar
diagnostic (line 99). Each now writes plain text to stderr AND tees a
structured logger.warn record with grammar/extensions/error fields.

Also: hoisted opts?.relevantExtensions into a local const so the closure
inside .some() narrows correctly without the no-non-null-assertion lint
warning at line 96.

Validation
- ESLint optional-grammars.ts: 0 errors, 0 warnings (was 2 errors + 1 warning)
- tsc --noEmit clean
- vitest run cli-message + logger: 25/25 pass

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-05-07 20:56:25 +01:00
azizur100389
4be4abe8e4
fix(group): contract extractors honour .gitnexusignore via shared IgnoreService (#1185) (#1247)
* fix(group): contract extractors honour .gitnexusignore via shared IgnoreService (#1185)

The HTTP, gRPC, and topic contract extractors each globbed the repo
with a hardcoded `ignore: ['**/node_modules/**', '**/.git/**',
'**/dist/**', '**/build/**', '**/vendor/**']` array, bypassing the
shared `IgnoreService` that the rest of the ingestion pipeline uses
for `.gitnexusignore` and `.gitignore` parsing. Result: a vendored
Python venv (`mentor_env/`), generated stubs, or any user-defined
exclusion silently produced false-positive contracts.

Replace each hardcoded array with `createIgnoreFilter(repoPath)`,
mirroring the canonical pattern in `filesystem-walker.ts`. The 5
hardcoded names are all in `DEFAULT_IGNORE_LIST`, so default
behaviour is preserved; users now also get `.gitnexusignore`
patterns, the rest of the hardcoded list (e.g. `__pycache__`,
`.pytest_cache`), and the `.gitnexusignore` negation semantics
introduced in #771.

The topic extractor additionally filters Go `*_test.go` at the glob
level. That filter is preserved via a small wrapper around
`createIgnoreFilter` that short-circuits before delegating, so
glob-level pruning still applies and the existing `_test.go` skip
test (with new content asserting the pruning is real) still passes.

Tests added to all three `*-extractor.test.ts` files exercising
`.gitnexusignore` honouring end-to-end via real temp directories.

* test(group): exercise gRPC source-scan ignore + add .gitignore-only coverage (#1185)

Addresses two findings from the @claude review on PR #1247:

[medium] The gRPC ignore test claimed to cover both proto-context and
source-scan paths but only wrote a .proto file under mentor_env/.
Added a Python `_pb2_grpc.<Name>Stub(channel)` consumer file under the
same ignored dir (mirroring the canonical pattern from
`test_extract_python_stub_returns_consumer`); without the
`.gitnexusignore` filter that file would emit a consumer contract.
The test now exercises both `createIgnoreFilter` calls inside the gRPC
extractor (`buildProtoContext` + `extract`) in a single run, with both
defence-in-depth path-prefix assertions and a specific
`role: consumer` LeakedService assertion.

[low] Added one shared .gitignore-only test on the HTTP extractor.
`createIgnoreFilter` reads both `.gitignore` and `.gitnexusignore` via
`loadIgnoreRules`, but no extractor-level test exercised the
`.gitignore` path. One shared test is sufficient because all three
extractors consume the same filter object — verified at
`IgnoreService` level already.

The remaining [low] finding — "negation semantics (!pattern) not
tested at extractor level" — is deferred deliberately, not skipped.
Three reasons:

  1. The negation logic (introduced in #771) lives entirely inside
     `createIgnoreFilter`'s `hasExplicitUnignore` ancestor-walk in
     `ignore-service.ts`. The extractors only consume the returned
     filter object — they never inspect patterns, never call
     `hasExplicitUnignore` directly, and have no code path that could
     diverge from the IgnoreService's negation behaviour.

  2. Negation is already locked in by 8 dedicated unit tests in
     `test/unit/ignore-service.test.ts` (the #771 suite), plus the
     `!parent/` + `parent/child/` last-match-wins regression test
     added in PR #1046. An extractor-level negation test would
     re-prove the same code path and would not catch any failure mode
     the existing tests don't already catch.

  3. The bot itself flagged the gap as "Acceptable to leave as
     follow-up referencing existing IgnoreService negation tests" —
     the deferral matches its own recommendation.

If a future change inserts an extractor-side wrapper around the filter
(as topic-extractor.ts already does for `*_test.go`) that could
plausibly affect negation, an extractor-level negation test should be
added at that point — not pre-emptively here.
2026-05-01 16:42:21 +01:00
Gergő Magyar
759c983dce
fix(extractors): resolve 3 silent contract mis-resolution bugs (#793) (#817)
* fix(extractors): resolve 3 silent contract mis-resolution bugs (#793)

Addresses Codex adversarial review findings for extractor contract
resolution on the new group extractor surface.

F1 (manifest-extractor): resolveSymbol passed the full "METHOD::path"
contract string through normalizeRoutePath, producing "/GET::/api/orders"
which never matches Route.name. Adds parseHttpContract() helper that
strips the METHOD:: prefix before path normalization. Contract ID
construction (buildContractId) is unchanged.

F2 (http-route-extractor): graph-assisted backfill used path-only
detections.find(), so multi-verb same-URL files attached the wrong
verb/handler to provider rows and inferred the wrong verb on FETCHES
consumer edges. Now requires path+method match when method is known,
and skips backfill when method is unknown and multiple detections tie
on path.

F3 (grpc-extractor): resolveProtoConflict seeded bestScore=-1 and only
replaced on strict >, so all-zero-score ties silently selected
candidates[0]. Now computes all scores, counts ties at the top score,
and returns null on ambiguity (caller skips contract emission and
warns with service name + candidate paths).

All three fixes are test-first; 73 tests pass across the three suites.
No schema changes, no new dependencies, contract ID wire format
(http::METHOD::path, grpc::pkg.Service/Method, http::*::path) preserved.

* fix(extractors): address PR #817 review — ambiguous symbol pick + contract id casing

Copilot + Claude review on PR #817 flagged two follow-up bugs on top of
the F1/F2/F3 fixes:

1. http-route-extractor: ambiguous multi-verb case left handlerName null
   but still ran the CONTAINS DB query. pickSymbolUid(syms, null) then
   silently picked pool[0] — reintroducing handler mis-attribution via
   a different route than the .find() bug F2 fixed. Now gates symbol
   enrichment on an ambiguousCandidates flag so the file-basename
   fallback wins instead.

2. manifest-extractor: buildContractId passed raw user casing through
   for the explicit-method form, so get::/api/orders and
   GET::/api/orders produced different contract ids even though
   parseHttpContract upper-cases during lookup. Now reuses
   parseHttpContract + normalizeRoutePath to canonicalize both method
   and path, so logically equivalent manifest inputs share a contract
   id (and share a manifestSymbolUid fallback).

Adds one regression test per bug: lowercase vs uppercase manifest
contract ids must match, and ambiguous multi-verb with CONTAINS rows
must not silently attach a real handler or call the CONTAINS query
at all. 75 tests pass across the three extractor suites.

* chore: prettier formatting
2026-04-14 08:03:02 +01:00
ivkond
4d4756fe86
feat(group): extractor expansion + manifest extractor (2/4 of #606 split) (#796)
* feat(group): extractor expansion + manifest extractor

Part 2 of 4 in the split of #606 (ticket: #792). Follows #795
(bridge.lbug storage foundation, already merged), but this PR has no
code-level dependency on #795 — it only imports types and the
ContractExtractor interface that existed on upstream main before
either PR. It could have been reviewed in parallel with #795.

## What changed

Expands the 3 existing contract extractors with substantially more
language/framework coverage, and adds a new `manifest-extractor`
that resolves `group.yaml`-declared cross-links against the per-repo
graph via exact-name lookups.

### New file (228 LOC)

- `gitnexus/src/core/group/extractors/manifest-extractor.ts` —
  exact graph lookup for `group.yaml`-declared cross-links. HTTP
  paths are canonicalized before Route.name matching; gRPC is
  resolved by service/method name (NO `.proto`-filename fallback);
  topic and lib use exact-name match. Falls back to a synthetic
  `manifest::<repo>::<contractId>` uid when the graph has no
  matching symbol, so cross-impact traversal still has a stable
  anchor for the contract.

### Modified extractors (+958 LOC prod)

- `extractors/grpc-extractor.ts` (+522) — `.proto` parser with
  comment and string-literal sanitization (braces inside strings no
  longer truncate service bodies); package/service/method canonical
  IDs; server/client detection across Go (`grpc.NewServer`,
  `RegisterXxxServer`, `XxxGrpc.XxxImplBase`), Java (`@GrpcService`,
  `BlockingStub`), Python (`servicer_to_server`, `XxxStub`), and
  TypeScript/Node (`@GrpcMethod`, `ClientGrpc`, `loadPackageDefinition`).
- `extractors/http-route-extractor.ts` (+174) — Go gin/echo/stdlib
  `HandleFunc`, NestJS `@Controller`+`@Get`/etc, Python FastAPI
  decorators, Java Spring `@RequestMapping`/`@GetMapping`,
  restTemplate / WebClient / OkHttp consumers.
- `extractors/topic-extractor.ts` (+98) — sarama `ProducerMessage{}`
  struct literal detection (replaces a constructor-anchored regex
  that missed topics inside producer loops), kafka-go Writer/Reader,
  Python NATS (`await nc.subscribe`/`await nc.publish`), JetStream
  helpers.

### Modified and new tests (+1264 LOC)

- `grpc-extractor.test.ts` (+539) — full coverage of the new proto
  parser (strings-with-braces regression, comments-with-braces
  regression), per-language server/client detection
- `http-route-extractor.test.ts` (+240) — per-framework route
  extraction + normalization edge cases
- `topic-extractor.test.ts` (+177) — the sarama in-loop regression,
  JetStream, Python NATS, kafka-go Writer/Reader
- `manifest-extractor.test.ts` (+308 NEW) — HTTP path normalization,
  gRPC exact lookup with proto-fallback regression, lib and topic
  exact matching, synthetic-uid fallback behavior

### Self-review fixes folded in

Carried forward from the #606 self-review (commit `d15b8cb`):

- **HIGH #1** — `manifest-extractor.resolveSymbol` was too fuzzy.
  Previously used `CONTAINS` on route/name fields plus an
  unconditional `filePath ENDS WITH '.proto'` fallback for gRPC.
  Consequences: `/orders` matched `/suborders`, and any repo with
  any `.proto` file returned a random proto symbol for a gRPC
  manifest entry. Replaced with exact equality + deterministic
  `ORDER BY` + synthetic-uid fallback for unresolved manifests.
  Regression tests included.
- **MED #3** — gRPC proto parser brace-depth counting now sanitizes
  strings and comments first (`stripProtoCommentsAndStrings`). A
  valid proto with `option deprecated_reason = "use NewService {
  instead"` used to have its service body closed early by the `"{"`
  inside the literal, silently dropping methods after the offending
  string. Regression tests for both string-with-brace and
  comment-with-brace cases.
- **MED #4** — sarama Kafka regex changed from
  `sarama.NewSyncProducer[\s\S]{0,300}?Topic:` (anchored on
  constructor, caught only first topic in a loop) to
  `sarama.ProducerMessage{...Topic:}` (matches every struct literal
  directly). Regression test with a for-loop that constructs
  multiple `ProducerMessage`s.
- **MED #7** — `manifest-extractor.resolveSymbol` no longer has a
  silent `catch { /* fall through */ }`. Errors from the graph
  executor are logged via `console.warn` with link type, contract
  name, repo key, and error message before falling through to the
  synthetic-uid path.

## Why

Reviewer focus here is pure regex / parser correctness — no
storage, no Cypher queries, no algorithmic changes to the cross-link
algorithm. Separating this from the bridge foundation PR (#795)
meant reviewers could stay in a single mental mode (parsing logic)
instead of context-switching between DDL, Cypher, and regex.

## How to verify

- `cd gitnexus && npx tsc --noEmit`
- `cd gitnexus && npx vitest run test/unit/group/grpc-extractor.test.ts --pool=forks`
- `cd gitnexus && npx vitest run test/unit/group/http-route-extractor.test.ts --pool=forks`
- `cd gitnexus && npx vitest run test/unit/group/topic-extractor.test.ts --pool=forks`
- `cd gitnexus && npx vitest run test/unit/group/manifest-extractor.test.ts --pool=forks`

Local pre-push: typecheck clean, all 99 extractor unit tests pass
(grpc 43, http 18, topic 30, manifest 8).

## Risk / rollback

**Low.** Extractors have no user-facing surface in this PR — they
produce `ExtractedContract[]` that is consumed by `sync.ts` in the
next split (#793). No existing behavior changes for users who don't
run a `group sync`. Rollback = `git revert` of the merge commit;
the modifications to `grpc-extractor.ts` / `http-route-extractor.ts`
/ `topic-extractor.ts` revert to the pre-PR versions that still
work (they're subsets of the new functionality).

## Scope discipline (per GUARDRAILS.md)

- Only the 8 files above are touched; no drive-by refactors
- No CI/release/security config changes
- No secrets or machine-specific paths
- Content lifted from #606 (CI 11/11 green on `d15b8cb`)

## Dependencies

- **Base:** `main` (upstream already includes #795 as `1ff324c`)
- **Blocks:** sync pipeline (#793) and the cross-impact feature (#794)
- **Tracker issue:** #792
- **Parent PR:** #606

Co-authored-by: Claude <noreply@anthropic.com>

* refactor(group): migrate topic-extractor from regex to tree-sitter queries

Addresses @magyargergo's feedback on #796 that regex-based lookups
should use tree-sitter nodes instead, and that the top-level
extractors must NOT carry language dependencies. This is phase 1 of
a multi-step migration — topic-extractor first because its patterns
are the most uniform (16 "call/annotation with first-arg string
literal" variants), which makes it a clean proof of the approach
before grpc-extractor and http-route-extractor get the same treatment.

## Architecture: language-agnostic orchestrator + per-language plugins

The top-level extractor is a thin orchestrator that never imports a
tree-sitter grammar or a query string. Per-language knowledge lives
in a new `topic-patterns/` folder with one file per language plus a
registry that maps file extensions to compiled plugins:

```
src/core/group/extractors/
├── tree-sitter-scanner.ts         # shared, language-agnostic scanning utilities
├── topic-extractor.ts              # thin orchestrator (no grammar imports)
└── topic-patterns/
    ├── types.ts                    # TopicMeta, Broker
    ├── index.ts                    # registry: extension → compiled provider
    ├── java.ts                     # tree-sitter-java + JAVA_TOPIC_PROVIDER
    ├── go.ts                       # tree-sitter-go + GO_TOPIC_PROVIDER
    ├── python.ts                   # tree-sitter-python + PYTHON_TOPIC_PROVIDER
    └── node.ts                     # tree-sitter-javascript + tree-sitter-typescript
                                    # → JAVASCRIPT_/TYPESCRIPT_/TSX_TOPIC_PROVIDER
```

**Shared scanner (`tree-sitter-scanner.ts`)** — defines
`PatternSpec<TMeta>`, `LanguagePatterns<TMeta>`, `CompiledPatterns<TMeta>`
and the `scanFile(parser, plugin, content)` helper. Plugins compile their
queries eagerly at module load via `compilePatterns()`, so a broken
pattern fails loudly at import time instead of silently at scan time.
`unquoteLiteral()` handles single/double/template quotes, Python
triple-quoted strings, and Go raw backtick strings.

**Per-language plugins** own:
- the tree-sitter grammar import (this is the ONLY place in
  `src/core/group/` where tree-sitter grammars are imported),
- the query S-expressions,
- the `TopicMeta` payload (role, broker, confidence, symbolName) that
  the orchestrator receives back on every match.

Each plugin uses a `@value` capture name to bind the topic literal node.
The JavaScript and TypeScript grammars share AST node names for every
construct we query, so `node.ts` defines the pattern sources once and
compiles them against `JavaScript`, `TypeScript.typescript`, and
`TypeScript.tsx` — exporting three providers because `Parser.Query`
objects are NOT portable across grammar instances.

**Registry (`topic-patterns/index.ts`)** — maps `.java` → Java provider,
`.go` → Go, `.py` → Python, `.js`/`.jsx` → JS, `.ts` → TS, `.tsx` → TSX.
Also exports `TOPIC_SCAN_GLOB` so adding a new language is a single
file-level edit (drop `topic-patterns/<lang>.ts`, import + register it
here — zero edits required in `topic-extractor.ts`).

**Orchestrator (`topic-extractor.ts`)** — ~110 lines, no grammar or
query imports. Per file: `getProviderForFile(rel)` → `scanFile(parser,
provider, content)` → `unquoteLiteral(valueText)` → `makeContract(...)`.
Reuses one `Parser` instance across files; the scanner calls
`setLanguage` per plugin.

## Why this is better than regex

1. **Comments and strings are respected for free.** The old regex
   would match `// kafkaTemplate.send("fake.topic")` as a real
   producer; tree-sitter never visits comments or string literals as
   code nodes, so false positives from commented-out code are
   eliminated.
2. **Struct/object literal patterns are structural, not textual.**
   `sarama.ProducerMessage{Topic: "..."}` no longer needs a 300-char
   lookahead (which was a known cross-match bug partly mitigated by a
   loop regression test in the self-review). The new query matches a
   specific `composite_literal` with a specific `qualified_type` and
   `keyed_element` — exactly one struct literal per match.
3. **No order-of-operations fragility.** Regex for
   `channel.publish` vs `channel.consume` was independent and
   file-wide; the AST scopes matches to the specific `call_expression`.
4. **Language-agnostic extension.** Adding Ruby, Rust, or C# topic
   detection later means dropping one file in `topic-patterns/` — no
   changes to shared scanner or orchestrator, and no tree-sitter
   imports leak into top-level code.

## Per-file fault tolerance

- Malformed files that tree-sitter can't parse are silently skipped
  (`parser.parse` is wrapped by `scanFile`). The ingestion pipeline
  already logs unparseable files at index time.
- A syntactically invalid query is caught at `compilePatterns` time,
  not scan time — broken plugins fail loudly at import.
- Per-pattern `matches()` failures are swallowed so one broken query
  in a plugin doesn't block the rest.

## Tests

All 30 existing `topic-extractor.test.ts` tests pass **without any
changes to the test file** — they were written as input/output contract
tests (given this source file, expect these `ExtractedContract` objects)
and that contract is unchanged. Regression coverage includes:

- Kafka: Java `@KafkaListener` + `kafkaTemplate.send`; Node
  `producer.send` + `consumer.subscribe`; Go sarama producer/consumer
  (sync and async); kafka-go Writer/Reader; Python `KafkaConsumer` +
  `producer.send/produce`
- RabbitMQ: Java `@RabbitListener` + `rabbitTemplate.convertAndSend`;
  Node `channel.consume/publish/sendToQueue`; Python `basic_consume/
  basic_publish` with keyword args
- NATS: Go and Node `nc.Subscribe/Publish`; Go and Node JetStream
  `js.Subscribe/Publish`; Python `await nc.subscribe/publish`

Including the regression test for the sarama `ProducerMessage`
in-loop case — the AST-based query captures every literal in the
file independently, not just the first one after `NewSyncProducer`.

## Neighbor regression check

- `topic-extractor.test.ts` — 30/30 pass (rewritten extractor)
- `http-route-extractor.test.ts` — 18/18 pass (untouched)
- `grpc-extractor.test.ts` — 43/43 pass (untouched)
- `manifest-extractor.test.ts` — 8/8 pass (untouched)
- Full `npx tsc --noEmit` clean

## Scope discipline (per GUARDRAILS.md)

- Only files under `src/core/group/extractors/` are touched; no
  changes to other extractors, tests, MCP surface, or pipeline.ts.
- No CI/release/security config changes, no secrets.
- New tree-sitter imports all reference grammars that are already
  installed as dependencies (`tree-sitter`, `tree-sitter-javascript`,
  `tree-sitter-typescript`, `tree-sitter-python`, `tree-sitter-java`,
  `tree-sitter-go` — all in `package.json` for the existing pipeline).

## Phase 2 / phase 3 plan

- **Phase 2 (next commit):** rewrite `http-route-extractor.ts`
  Strategy B (regex fallback) on the same plugin pattern. Graph-assisted
  Strategy A stays as-is (already uses pipeline-built tree-sitter data
  via `HANDLES_ROUTE` Cypher queries).
- **Phase 3 (commit after):** rewrite `grpc-extractor.ts` for Java /
  Go / Python / TypeScript detection. `.proto` files are the one
  outstanding question — there is no `tree-sitter-proto` grammar
  installed; the in-tree string-sanitizing parser stays as a pragmatic
  exception with a comment, alternative being to add
  `tree-sitter-proto` as a dep (open for the maintainer).

Co-authored-by: Claude <noreply@anthropic.com>

* refactor(group): migrate http-route-extractor Strategy B to tree-sitter plugins

Phase 2 of the extractor refactor requested by @magyargergo on #796.
Same architecture as the phase 1 topic-extractor rewrite: a thin,
language-agnostic orchestrator plus per-language plugins that own
tree-sitter grammars and query sources. The top-level extractor file
no longer imports any tree-sitter grammar or query string.

## Architecture

```
src/core/group/extractors/
├── tree-sitter-scanner.ts          # shared, language-agnostic primitives
├── http-route-extractor.ts         # thin orchestrator (no grammar imports)
└── http-patterns/
    ├── types.ts                    # HttpDetection, HttpLanguagePlugin, HttpRole
    ├── index.ts                    # registry: ext → plugin + HTTP_SCAN_GLOB
    ├── java.ts                     # tree-sitter-java: Spring + RestTemplate/WebClient/OkHttp
    ├── go.ts                       # tree-sitter-go: gin/echo/HandleFunc + http/resty consumers
    ├── python.ts                   # tree-sitter-python: FastAPI + requests
    ├── php.ts                      # tree-sitter-php: Laravel Route::get/...
    └── node.ts                     # tree-sitter-javascript + tree-sitter-typescript:
                                    #   NestJS controllers, Express, fetch, axios
```

**Shared scanner (`tree-sitter-scanner.ts`)** — generalised from phase 1:
- `ScanMatch<TMeta>.captures` is now a full `CaptureMap` (every named
  capture the query binds, not just a single `@value`). Topic extractor
  updated to read `match.captures.value` accordingly.
- New `runCompiledPatterns(plugin, tree)` helper lets plugins run
  multiple query bundles against the same pre-parsed tree. This is
  needed for HTTP plugins that combine a class-prefix query with a
  method-route query (Spring, NestJS).
- `scanFile` becomes a thin wrapper over `parser.parse + runCompiledPatterns`.

**HTTP plugin shape** — unlike topic plugins, HTTP plugins expose a
`scan(tree)` function rather than a flat pattern list. This reflects
HTTP's more complex extraction: each detection needs method + path +
handler name, and framework patterns like Spring `@RequestMapping` /
NestJS `@Controller` require cross-referencing a class-level prefix
with method-level annotations. Plugins internally use
`compilePatterns` + `runCompiledPatterns` and walk the AST to resolve
the class/method relationships.

**Per-framework coverage:**

- **Java (`java.ts`)**
  - Spring: `@RequestMapping("/api/v2")` class prefix + `@(Get|Post|Put|
    Delete|Patch)Mapping("/sub")` method routes, joined via the
    enclosing `class_declaration` node id.
  - `RestTemplate.getForObject/postForEntity/put/delete/patchForObject` →
    method derived from API name.
  - `WebClient.method(HttpMethod.X, "/path")` → method from
    `HttpMethod.X` capture.
  - `new Request.Builder().url("/path")` → OkHttp consumer.

- **Go (`go.ts`)**
  - gin / echo / chi frameworks: `\w+.GET("/path", handler)` captures
    upper-case verb + handler identifier.
  - `net/http.HandleFunc("/path", handler)` → provider (default GET).
  - `http.Get/Post/Head` consumer, `http.NewRequest("METHOD", ...)`,
    resty `client.R().Get/Post/...`.

- **Python (`python.ts`)**
  - `@app.get("/path")` FastAPI decorators.
  - `requests.get/post/...` and `requests.request("METHOD", "url")`.

- **PHP (`php.ts`)**
  - Laravel `Route::get/post/.../patch('/path', ...)` via
    `scoped_call_expression`. Uses `PHP.php_only` to match the
    existing ingestion pipeline's grammar selection.

- **Node (`node.ts`) — JS + TS + TSX**
  - Pattern sources defined once, compiled against three grammar
    variants (`JavaScript`, `TypeScript.typescript`, `TypeScript.tsx`)
    because `Parser.Query` objects are not portable across grammars.
    Exports three plugins sharing the same `scan` logic.
  - NestJS: `@Controller('prefix')` decorators are siblings of the
    class in `export_statement` / `program`; `@Get(':id')` decorators
    are siblings of the method in `class_body`. The plugin walks
    decorator → next named sibling to find the decorated class /
    method, then combines the class prefix with the method path.
    Only emits NestJS detections when the enclosing class has a real
    `@Controller` decorator — prevents false positives from generic
    classes that happen to use `@Get` from another library.
  - Express: `(router|app).<verb>('/path', ...)`.
  - `fetch(url)` (default GET) + `fetch(url, { method: 'X' })`
    (uses two queries + a SyntaxNode-id dedupe set so URL literals
    aren't double-emitted by the options variant).
  - `axios.get/post/...`.

## Orchestrator changes

`http-route-extractor.ts` drops every `scanXxxProviders` / `scanXxxConsumers`
regex method and replaces them with a single source-scan loop that
delegates to `getPluginForFile(rel).scan(tree)`. The orchestrator
still owns:

- **Path normalization** (`normalizeHttpPath`, `normalizeConsumerPath`)
  — language-agnostic string processing shared by both strategies.
- **Graph-assisted Strategy A** (`HANDLES_ROUTE` / `FETCHES` / `CONTAINS`
  Cypher queries) — unchanged in spirit. The only regex helpers it
  used (`inferMethodFromFileScan`, `pickJavaHandlerName`) are now
  replaced by a lookup against the plugin's detections for the same
  file: for each route row, find the detection whose normalized path
  matches, and pull the HTTP method + handler name from it.
- **Per-file parse cache** — the orchestrator parses each relevant
  file at most once per `extract()` call. Both the graph-assisted
  enrichment loop and the source-scan fallback share the same
  `cachedDetections` map, so we never run the plugin twice for the
  same file.

## Why this is better than the regex version

1. **Comments and strings for free.** The old regex would match
   `// router.get('/fake')` as a real Express route; tree-sitter
   never visits string/comment nodes.
2. **Structural controller-prefix.** Spring and NestJS class-prefix
   joining is now scoped to the enclosing class via `class_declaration`
   node ids, eliminating file-wide state that broke when a file had
   multiple controllers.
3. **Precise NestJS disambiguation.** The plugin only emits a NestJS
   detection when the enclosing class has a real `@Controller`
   decorator — the old regex would fire on any `@Get(...)` in the
   file regardless of surrounding context.
4. **Language-agnostic extension.** Adding Ruby / Rust / Kotlin HTTP
   detection later means dropping one file in `http-patterns/` — no
   changes to the shared scanner, the orchestrator, or the Strategy A
   Cypher queries.

## Tests

- `http-route-extractor.test.ts` — **18/18 pass** (tests unchanged;
  they're contract-style input/output tests and the contract shape is
  unchanged). Covers Spring class prefix, Express, gin/echo, stdlib
  HandleFunc, NestJS, Laravel, FastAPI for providers and
  fetch/axios/python-requests/rest-template/webClient/okhttp/go-stdlib/
  resty for consumers, plus graph-first Strategy A for both.
- `topic-extractor.test.ts` — **30/30 pass** after the `captures.value`
  API migration.
- `grpc-extractor.test.ts` — 43/43 pass (untouched; phase 3).
- `manifest-extractor.test.ts` — 8/8 pass (untouched).
- `service.test.ts`, `sync.test.ts`, `storage.test.ts` — 41/41 pass.
- `npx tsc -p tsconfig.json --noEmit` clean.

## Scope discipline (per GUARDRAILS.md)

- Only files under `src/core/group/extractors/` are touched.
- No changes to pipeline.ts, MCP surface, ingestion, or tests.
- No CI / release / security / secrets changes.
- Tree-sitter grammars imported by plugins (`tree-sitter-java`,
  `tree-sitter-go`, `tree-sitter-python`, `tree-sitter-php`,
  `tree-sitter-javascript`, `tree-sitter-typescript`) are all already
  in `package.json` for the existing ingestion pipeline.

## Phase 3 plan

- **grpc-extractor** gets the same treatment: plugin-per-language under
  `grpc-patterns/` for Java / Go / Python / TS detection. `.proto`
  files remain an open question — no `tree-sitter-proto` grammar is
  installed, so the in-tree string-sanitizing parser from PR #796's
  self-review stays as a pragmatic exception unless the maintainer
  wants us to add `tree-sitter-proto` as a new dep.

Co-authored-by: Claude <noreply@anthropic.com>

* refactor(group): migrate grpc-extractor source scans to tree-sitter plugins

Phase 3 (final) of the extractor refactor requested by @magyargergo on
#796. Same architecture as phase 1 (topic) and phase 2 (http): thin
language-agnostic orchestrator + per-language plugins that own
tree-sitter grammars and query sources. With this commit the top-level
extractors under `src/core/group/extractors/` import ZERO tree-sitter
grammars and ZERO query strings — every grammar import lives in a
`*-patterns/<lang>.ts` plugin file, and the orchestrators go through
the registry indirection.

## Architecture

```
src/core/group/extractors/
├── tree-sitter-scanner.ts         # shared primitives (unchanged)
├── grpc-extractor.ts               # orchestrator (only `.proto` parser left)
└── grpc-patterns/
    ├── types.ts                    # GrpcDetection, GrpcLanguagePlugin, GrpcRole
    ├── index.ts                    # registry: ext → plugin + GRPC_SCAN_GLOB
    ├── go.ts                       # tree-sitter-go: RegisterXxxServer, Unimplemented, NewXxxClient
    ├── java.ts                     # tree-sitter-java: @GrpcService + XxxImplBase + newBlockingStub
    ├── python.ts                   # tree-sitter-python: add_XxxServicer_to_server + XxxStub
    └── node.ts                     # tree-sitter-javascript + tree-sitter-typescript:
                                    #   @GrpcMethod, @GrpcClient field type,
                                    #   .getService<X>('Svc'), new XxxServiceClient,
                                    #   loadPackageDefinition dynamic constructors
```

## Per-language coverage

**Go (`go.ts`)**
- Provider: `\w+.RegisterXxxServer(...)` via `call_expression →
  selector_expression → field_identifier` + JS regex filter
  `^Register(\w+)Server$`.
- Provider: `pb.UnimplementedXxxServer` embedded in a struct via
  `struct_type → field_declaration_list → field_declaration →
  qualified_type → type_identifier` + JS filter.
- Consumer: `\w+.NewXxxClient(...)` via the same call_expression
  query + JS filter `^New(\w+)Client$`.

**Java (`java.ts`)**
- Provider: `class X extends YyyGrpc.YyyImplBase` — two queries
  handle the scoped and plain forms. `scoped_type_identifier`'s
  children are positional (no `scope:`/`name:` fields), so the
  query matches the two `type_identifier` children by position.
- `#match? @inner "ImplBase$"` restricts matches at query time.
- Whether the class has `@GrpcService` or not controls only the
  `source` metadata label — the plugin walks the class_declaration's
  `modifiers` child in JS to detect the marker_annotation.
- Consumer: `YyyGrpc.newStub(ch)` / `newBlockingStub(ch)` via a
  `method_invocation` query with `#match? @method
  "^new(Blocking)?Stub$"`, service name extracted via
  `^(\w+)Grpc$` on the object identifier.

**Python (`python.ts`)**
- Single call-expression query covers both bare identifier and
  `obj.method` attribute forms:
  `(call function: [(identifier) @fn (attribute attribute: (identifier) @fn)])`.
- Plugin filters `@fn.text` against two JS regexes:
  `^add_(\w+)Servicer_to_server$` (provider) and `^(\w+)Stub$`
  (consumer), with a reserved-names ignore list for the Stub case
  (Mock / Test / Fake / Stub).

**Node — JavaScript + TypeScript + TSX (`node.ts`)**
- Pattern sources defined once, compiled three times (one per grammar)
  because `Parser.Query` objects are not portable across grammars.
  Exports three `GrpcLanguagePlugin`s sharing the same `scan`.
- `@GrpcMethod('Service', 'Method')`: decorator query captures the
  two string literals. Confidence is hard-coded 0.8 regardless of
  proto map resolution (matches the original regex version's
  behaviour).
- `@GrpcClient(...) field: XxxServiceClient`: decorator query
  captures the decorator node, plugin walks up to find the enclosing
  `public_field_definition` (decorators on fields are CHILDREN of
  the field definition in tree-sitter-typescript, not siblings) and
  reads its first `type_annotation → type_identifier`, then runs the
  `^(\w+Service)Client$` JS filter.
- `client.getService<X>('AuthService')`: call-expression query on
  `member_expression.property = "getService"` + string literal arg.
- `new XxxServiceClient(...)`: `new_expression` with a bare
  identifier constructor, filtered by `^(\w+Service)Client$` so
  generic `new AuthClient(...)` (missing the `Service` infix) does
  NOT falsely register as a consumer. Preserves the regression test
  `test_extract_ts_non_service_client_constructor_is_ignored`.
- `loadPackageDefinition` dynamic loader: gated on
  `tree.rootNode.text.includes('loadPackageDefinition')`. When set,
  `new foo.bar.Xxx(...)` qualified constructors with a capitalised
  property name register as consumers.

## Orchestrator changes

`grpc-extractor.ts` loses every `scanGoProviders` / `scanJavaProviders`
/ ... helper and replaces them with a single source-scan loop that:

1. Parses each file with the plugin's grammar (one shared `Parser`
   instance across all files, `setLanguage` called per plugin).
2. Calls `plugin.scan(tree)` to get `GrpcDetection[]`.
3. Converts each detection to an `ExtractedContract` via the private
   `detectionToContract` helper, which:
   - Looks the short service name up in the proto map (filled by
     the `.proto` parser).
   - Picks confidence = `confidenceWithProto` if resolved, else
     `confidenceWithoutProto`.
   - Builds a method-level contract id (`grpc::pkg.Svc/Method`) when
     the detection carries a `methodName` (TS `@GrpcMethod` only),
     otherwise a service-level id (`grpc::pkg.Svc/*`).

Everything else — the `.proto` parser, `buildProtoContext`,
`buildProtoMap`, `resolveProtoConflict`, `serviceContractId`,
`stripProtoCommentsAndStrings`, `extractServiceBlocks`, the dedupe
function — stays exactly as before. The `.proto` parser is kept as a
pragmatic exception to the "no regex in extractors" rule because no
`tree-sitter-proto` grammar is installed in the repo; a comment at the
top of the file explains this and flags the maintainer option of
adding `tree-sitter-proto` as a dependency.

## Why this is better than the regex version

1. **Comments and strings are respected for free.** Matched node types
   are only code constructs, never text inside comments or string
   literals.
2. **No false positives on partial names.** The old `(\w+?)Grpc`-style
   regexes would cross-match unrelated identifiers; structural queries
   restrict matches to the exact AST shape (`scoped_type_identifier →
   type_identifier` pairs, `method_invocation → identifier` etc.).
3. **NestJS `@GrpcClient` is structural, not regex-based.** The old
   regex required a specific textual layout
   (`@GrpcClient(...) private readonly foo!: XxxServiceClient`); the
   plugin now walks the AST, so modifier order / optional modifiers /
   multi-line formatting don't break it.
4. **Language-agnostic extension.** Adding Kotlin / Rust / C# gRPC
   detection later is a one-file edit in `grpc-patterns/index.ts` —
   no touches to the shared scanner, the orchestrator, or the proto
   parser.

## Tests

- `grpc-extractor.test.ts` — **43/43 pass** (tests unchanged; the
  contract shape is identical). Covers .proto parsing (including the
  brace-inside-string regression), Go provider/consumer,
  Java @GrpcService / plain ImplBase provider + newBlockingStub
  consumer, Python servicer + stub, TS @GrpcMethod + @GrpcClient +
  .getService + new XxxServiceClient + loadPackageDefinition + the
  `AuthClient` vs `AuthServiceClient` discrimination, dedupe across
  multiple patterns in one file, proto-aware confidence, and the
  inherited-package resolution for split proto definitions.
- `topic-extractor.test.ts` — 30/30 pass.
- `http-route-extractor.test.ts` — 18/18 pass.
- `manifest-extractor.test.ts` — 8/8 pass.
- `service.test.ts`, `sync.test.ts`, `storage.test.ts` — 41/41 pass.
- `npx tsc -p tsconfig.json --noEmit` clean.

## Scope discipline (per GUARDRAILS.md)

- Only files under `src/core/group/extractors/` are touched.
- No pipeline.ts, MCP surface, ingestion, CI / release / security, or
  test changes.
- New tree-sitter grammar imports (`tree-sitter-go`, `tree-sitter-java`,
  `tree-sitter-python`, `tree-sitter-javascript`, `tree-sitter-typescript`)
  are all already installed for the ingestion pipeline.

## End of phase series

This commit completes the three-phase extractor refactor:
  - **Phase 1** (`ea06d11`): topic-extractor → `topic-patterns/`
  - **Phase 2** (`b6015f6`): http-route-extractor → `http-patterns/`
  - **Phase 3** (this commit): grpc-extractor → `grpc-patterns/`

Every remaining regex-based extractor helper under the `src/core/group/
extractors/` directory is either (a) language-agnostic string
processing (path normalization, dedupe keys) or (b) the `.proto`
parser, which is documented as an explicit exception.

Co-authored-by: Claude <noreply@anthropic.com>

* feat(group): add tree-sitter-proto for .proto file parsing

Addresses @magyargergo's suggestion on #796 to replace the manual
string-sanitizing .proto parser with a tree-sitter grammar.

- **Vendored `tree-sitter-proto`** in `vendor/tree-sitter-proto/`.
  Grammar source from [coder3101/tree-sitter-proto](https://github.com/coder3101/tree-sitter-proto)
  (latest `grammar.js`), parser.c regenerated with `tree-sitter-cli
  0.24` to produce ABI version 14 — compatible with the project's
  `tree-sitter 0.25` runtime (which supports ABI ≤ 14). Added as
  `optionalDependency` with `file:./vendor/tree-sitter-proto`.

- **New `grpc-patterns/proto.ts` plugin** — uses the same
  `compilePatterns` + `runCompiledPatterns` infrastructure as every
  other plugin. Two queries:
  - `(package (full_ident) @pkg)` — package declaration
  - `(service (service_name) @service_name (rpc (rpc_name) @rpc_name))`
    — one match per (service, rpc) pair

- **Graceful fallback** — `tree-sitter-proto` is an optional
  dependency. If it fails to install (platform incompatibility) or
  fails the runtime smoke-test (`setLanguage` + `parse` on a trivial
  proto), `PROTO_GRPC_PLUGIN` stays `null` and the orchestrator
  uses the existing manual parser. The smoke-test catches the
  `SyntaxNode` TDZ error that occurs in vitest's fork-based test
  runner.

- **Orchestrator updated** — when `hasProtoPlugin` is true, `.proto`
  files are handled by the plugin loop (they're included in
  `GRPC_SCAN_GLOB`), and the manual `parseProtoFile` loop is
  skipped. `buildProtoContext` still runs to build the proto map
  for cross-referencing source-file detections.

1. **No manual comment/string stripping.** The old parser needed
   `stripProtoCommentsAndStrings` (110 lines) to avoid counting
   braces inside comments and string literals. tree-sitter handles
   this natively.
2. **No brace-depth tracking.** `extractServiceBlocks` used a manual
   depth counter to find service boundaries. tree-sitter's AST gives
   us `service` → `service_name` + `rpc` → `rpc_name` directly.
3. **Performance.** tree-sitter's C-based parser is faster than
   character-by-character JS scanning + regex on large proto files.

- `grpc-extractor.test.ts` — **43/43 pass** (unchanged)
- All other extractor tests — 99/99 pass
- `npx tsc -p tsconfig.json --noEmit` clean

Co-authored-by: Claude <noreply@anthropic.com>

* chore: add .gitignore for vendored tree-sitter-proto build artifacts

https://claude.ai/code/session_01SFUCxgKMMQ8EgRHYw91xPU

* fix: correct .gitignore paths for vendored tree-sitter-proto

Patterns should be relative to the .gitignore file's directory.

https://claude.ai/code/session_01SFUCxgKMMQ8EgRHYw91xPU

* refactor(group): address Copilot review feedback on #796

Six fixes suggested by the Copilot AI review:

1. **`normalizeHttpPath` root-path edge case** — stripping trailing
   slashes on the input `/` produced an empty string, yielding
   malformed contract ids like `http::GET::`. Now preserves `/` for
   the root handler/fetch case.

2. **Dedupe `scanFiles` call** — `extract()` was globbing the
   source-scan file list twice (once for the provider fallback, once
   for the consumer fallback). Moved to a single lazy call that
   memoizes the result for the rest of the method.

3. **HTTP `scanFiles` now ignores `**/vendor/**`** — every other
   extractor's glob already ignored vendored sources; the HTTP one
   didn't. Fixed for consistency.

4. **`loadPackageDefinition` check is now structural** — was calling
   `tree.rootNode.text.includes('loadPackageDefinition')` which forces
   materialization of the entire file text from the parse tree
   (expensive on large files). Replaced with a dedicated compiled
   query on `(call_expression function: [(identifier) | (member_expression)])`
   so the check stays in the AST domain.

5. **`grpc-extractor.ts` header docstring updated** — still claimed
   ".proto parsing is not tree-sitter-based because no grammar is
   installed". Now describes the actual behaviour: tree-sitter when
   `tree-sitter-proto` is available (optionalDependency), manual
   fallback otherwise.

6. **Eliminated the double proto file parse on the fallback path** —
   `buildProtoContext` already globs + parses every `.proto` file to
   build `servicesByName`. On the `!hasProtoPlugin` branch the
   extractor was globbing + parsing again via the now-removed
   `parseProtoFile` helper. The fallback branch now iterates the map
   that `buildProtoContext` already produced to emit provider
   contracts directly — single pass per proto file.

## Tests

- `topic-extractor.test.ts` — 30/30 pass
- `http-route-extractor.test.ts` — 18/18 pass
- `grpc-extractor.test.ts` — 43/43 pass
- `manifest-extractor.test.ts` — 8/8 pass
- `npx tsc -p tsconfig.json --noEmit` clean

Co-authored-by: Claude <noreply@anthropic.com>

* refactor(group): address Claude review feedback (bugs + dedup + hygiene) on #796

Follows up `2f28bfc` with the remaining items from the Claude AI review:

## Bugs

**Bug 2 — Label-unaware Cypher queries in `resolveSymbol`.**
The manifest-extractor's lookup queries were `MATCH (n) WHERE n.name = $x`
with no label filter, so a topic/service/package name could silently match
any node type (File, Variable, Import, Folder, …). Added label filters:
- `topic` → `(n:Function|Method|Class|Interface)` (topics are best-effort
  symbol-name matches against listener/publisher symbols)
- `grpc` method → `(n:Function|Method)`
- `grpc` service → `(n:Class|Interface)`
- `lib` → `(n:Package|Module)`

All 8 manifest-extractor tests still pass (mock executor is
label-agnostic, but the production LadybugDB graph now gets correctly
scoped queries).

**Bug 8 — Tautological `!handlerName` condition.**
`http-route-extractor.ts:extractProvidersGraph` had
`let handlerName = null; if (!method || !handlerName) { ... }` — the
`!handlerName` clause was always true since there was no intervening
assignment. Simplified to always run the plugin-scan lookup (we need
the handler name even when `methodFromRouteReason` already resolved
the method).

## Clean code / dedup

**Design 7 — `readSafe` was copy-pasted in all three orchestrators.**
Extracted to `extractors/fs-utils.ts` as the single source of truth
for the path-traversal guard. Dropped the three local copies and the
now-unused `fs`/`path` imports from topic-extractor.

**Style 10 — Language-specific `_test.go` skip in the topic orchestrator.**
Was `if (rel.endsWith('_test.go')) continue;` inside the language-
agnostic extraction loop. Pushed into the glob's ignore list
(`'**/*_test.go'`) alongside the existing `node_modules`, `vendor`,
`dist`, `build` entries, with a comment explaining that other
languages' test file conventions either live in separate directories
(Python `tests/`, Java `src/test/`) or are already covered by the
existing ignores.

## Already addressed in `2f28bfc` (mentioned again in Claude review)

- Bug 3: `normalizeHttpPath('/')` returns `''` — fixed
- Bug 4: double glob + double parse of `.proto` — fixed
- Bug 5: `scanFiles` called twice in HTTP — fixed
- Bug 6: missing `**/vendor/**` in HTTP glob — fixed
- Design 9 partially: `tree.rootNode.text.includes('loadPackageDefinition')`
  replaced with a dedicated structural query

## Deferred

- Bug 1 (`http::*::path` vs `http::GET::path` matching) — out of scope;
  sync.ts matching logic lands in #793, manifest extractor already
  emits correct synthetic uids for unresolved HTTP contracts.
- Design 9 full (change plugin `scan(tree)` → `scan(tree, source)`) —
  the only real use case (`loadPackageDefinition` gate) is already
  fixed via a structural query, so the interface change would be
  cosmetic churn without a concrete consumer.

## Tests

- `topic-extractor.test.ts` — 30/30 pass
- `http-route-extractor.test.ts` — 18/18 pass
- `grpc-extractor.test.ts` — 43/43 pass
- `manifest-extractor.test.ts` — 8/8 pass
- `npx tsc -p tsconfig.json --noEmit` clean

Co-authored-by: Claude <noreply@anthropic.com>

* docs+fix(group): address remaining Claude review items + add pipeline flow chart

## Fixes

**Remaining 🔴 — HTTP contract id wildcard format.** Documented the
`http::*::<path>` format as an intentional wildcard for manifest links
that omit the HTTP method, alongside the explicit-method form
(`GET::/path` → `http::GET::/path`). The docblock on `buildContractId`
now states both forms, notes that wildcard-aware matching is the
responsibility of the sync / cross-impact layer (#793), and
recommends the explicit-method form whenever the author knows the
method (it round-trips through exact equality without needing
wildcard logic downstream). Tests unchanged — the wildcard format is
what they've always asserted.

**Minor 1 — stale comment at `manifest-extractor.ts:124-126`.** The
comment claimed "creates a contract with an empty symbolUid/ref" but
the code switched to `manifestSymbolUid(repo, contractId)` a few
commits back. Updated to describe the actual synthetic-uid fallback
semantics and the cross-impact path that relies on both sides of the
join deriving the same uid.

**Minor 2 — exhaustiveness guard on `buildContractId`.** The
`switch(type)` covered all five current `ContractType` variants but
silently returned `undefined` if a new variant was added. Added a
`default: const _exhaustive: never = type; throw new Error(...)`
clause so the build fails loudly on an unhandled variant.

**Minor 3 — `tree.rootNode.text` in `grpc-patterns/node.ts`.** Already
fixed in `2f28bfc` via a dedicated structural query
(`LOAD_PACKAGE_DEFINITION_SPEC`). No action needed.

## New: pipeline flow chart (per @magyargergo's request)

Added `src/core/group/PIPELINE.md` with four Mermaid diagrams:
1. **High-level overview** — `group.yaml` → extractors + manifest →
   contract matching → `bridge.lbug` → `runGroupImpact`.
2. **Per-repo extractor two-strategy shape** — graph-assisted
   Strategy A vs. source-scan Strategy B.
3. **Plugin architecture** — orchestrator → registry →
   per-language `*-patterns/<lang>.ts` → `tree-sitter-scanner.ts` →
   `ExtractedContract`.
4. **Manifest extraction** — label-scoped `resolveSymbol` with the
   synthetic-uid fallback.
5. **Cross-impact query (#606)** — local impact → bridge join →
   cross-repo fan-out.

Each diagram is annotated with which PRs own which stage (this PR:
extractors + manifest; #795: bridge storage; #606: cross-impact
runtime) and points at the concrete files/functions involved.

## Tests

- 99/99 extractor tests pass
- `npx tsc -p tsconfig.json --noEmit` clean

Co-authored-by: Claude <noreply@anthropic.com>

---------

Co-authored-by: Claude <noreply@anthropic.com>
2026-04-13 08:49:30 +01:00
ivkond
255e3e79eb fix(group): address 4 HIGH-priority issues from PR #626 review
1. Path traversal via group name — add validateGroupName() with regex
   [a-zA-Z0-9][a-zA-Z0-9_-]*, called in getGroupDir (defense in depth)

2. gRPC proto regex can't handle nested braces — replace serviceRe with
   extractServiceBlocks() brace-depth counter (init depth=1, skip
   malformed protos)

3. Service boundary detector directory exclusions — add EXCLUDED_DIRS
   set (vendor, target, build, dist, __pycache__, .venv, venv, .tox,
   .mypy_cache, .gradle, .mvn, out, bin) replacing inline node_modules

4. Double-close of LadybugDB pools — remove blanket closeLbug() from
   cli/group.ts; sync.ts per-id cleanup is sufficient

Tests: 22 new tests across 5 files. Full suite: 4706 passed, 0 failed.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-02 12:55:33 +03:00
ivkond
4fa395f4b6 feat(group): add service boundary detection and contract extractors
Service communication detection for microservice monorepos:

- ServiceBoundaryDetector: auto-detects service boundaries via markers
  (package.json, go.mod, Dockerfile, pom.xml, Cargo.toml, build.gradle,
  pyproject.toml, etc.)
- HttpRouteExtractor: graph-assisted (Strategy A) with source-scan
  fallback (Strategy B) for Spring, Express, Laravel, FastAPI providers
  and fetch/axios consumers
- GrpcExtractor: parses .proto files, detects Go/Java/Python/TS gRPC
  servers (RegisterXxxServer, @GrpcService, add_XxxServicer_to_server,
  @GrpcMethod) and clients (NewXxxClient, newBlockingStub, XxxStub)
- TopicExtractor: Kafka (@KafkaListener, producer.send), RabbitMQ
  (@RabbitListener, channel.publish/consume), NATS (nc.Subscribe/Publish)
  across Java, Node, Go, and Python

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-02 00:40:12 +03:00