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29 commits
| Author | SHA1 | Message | Date | |
|---|---|---|---|---|
Gergő Magyar
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ebbcd5b0b4
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fix(mcp): name the indexed ref on hot read tool staleness (#3291) (#3293) | ||
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Gergő Magyar
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a82362765c
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fix: stop analyze from clobbering customized GitNexus skills (#3124)
* fix: preserve customized SKILL.md files during analyze Skip overwriting standard GitNexus skill files when they already differ from the bundled template, and keep divergent nested leftovers instead of deleting them. Fixes #3080 Co-authored-by: Cursor <cursoragent@cursor.com> * docs: note --skip-agents-md does not skip skills Point operators at --skip-skills so the AGENTS/CLAUDE skip flag is not mistaken for a full agent-file freeze. Co-authored-by: Cursor <cursoragent@cursor.com> * fix(review): treat unreadable SKILL.md as an error, not missing Only ENOENT counts as absent so EACCES cannot fall through to recursive rm. Strengthen the skipSkills nested leftover test with a bundle-identical file that install would otherwise delete. Co-authored-by: Cursor <cursoragent@cursor.com> * fix(ci): prettier-format ai-context unit tests Co-authored-by: Cursor <cursoragent@cursor.com> * docs: clarify --skip-agents-md vs community --skills Co-authored-by: Cursor <cursoragent@cursor.com> * test: pin GITNEXUS_LANG=en for skip-agents-md help assertions Co-authored-by: Cursor <cursoragent@cursor.com> * fix: preserve customized skills in analyze summaries and setup Report preserved vs written skills, keep leftover nested directories that contain extra files, and skip setup overwrite of divergent SKILL.md. Co-authored-by: Cursor <cursoragent@cursor.com> * Address PR review feedback (#3124) Preserve operator-edited files inside directory skills during setup, and restore GITNEXUS_TEST_SKILLS_ROOT after the Antigravity skill tests. Co-authored-by: Cursor <cursoragent@cursor.com> * Address PR review feedback (#3124) Copy directory-skill companions even when SKILL.md is customized, while still skipping files whose bytes already differ from the bundle. Co-authored-by: Cursor <cursoragent@cursor.com> --------- Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com> Co-authored-by: Cursor <cursoragent@cursor.com> |
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MyShining
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c217a0f257
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feat(spring): import optional Actuator runtime data with Kotlin JVM mapping (#3107) | ||
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Gergő Magyar
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54f97c86c7
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fix(impact): make File risk comparable via shared axes (#3075) (#3082)
* docs(plans): add impact file risk plan Capture the evidence, constraints, and verification path for fixing incomparable File and symbol impact risk. Co-authored-by: Cursor <cursoragent@cursor.com> * refactor(impact): centralize risk scoring Keep the existing thresholds in one shared scorer and expose a common-axis comparison for targets with unavailable enrichment axes. Co-authored-by: Cursor <cursoragent@cursor.com> * fix(impact): expose incomparable file risk scale Mark File impact results when process and module axes are unavailable, and provide a common-axis score for honest cross-kind comparisons. Co-authored-by: Cursor <cursoragent@cursor.com> * fix(impact): explain cross-kind risk comparisons Surface the common-axis score in CLI and agent guidance while reusing the shared threshold ladder in the web impact tool. Co-authored-by: Cursor <cursoragent@cursor.com> * fix(impact): fail closed when enrichment is incomplete Preserve proved HIGH/CRITICAL process counts, treat failed queries as UNKNOWN, and surface riskScale metadata on MCP, group, CLI, and Graph-RAG File walks. Co-authored-by: Cursor <cursoragent@cursor.com> --------- Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com> Co-authored-by: Cursor <cursoragent@cursor.com> |
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Gergő Magyar
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22d3c2ad74
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fix(cli): stop churning the committed agent guides, and nudge --index-only (#2907) (#2927)
AGENTS.md and CLAUDE.md are the agent guides teams commit, and the injected
block carried live symbol/relationship/flow counts. Those counts move with any
code change, so every reindex rewrote a tracked file and produced a spurious
diff that had to be restored by hand before committing real work.
The write is now skipped when the volatile counts are the only delta. Counts are
substituted with placeholders — not deleted — before the comparison, so
--no-stats REMOVING the parenthetical is still a material change that writes
through; only a numbers-only difference is suppressed. Both the verbose path and
the gitnexus:keep path go through the same rule, and a project rename, a template
change, or a base_ref change still rewrites as before. Live counts remain
available from `gitnexus status` and `gitnexus://repo/{name}/context`.
Two smaller churn sources go with it:
- The file was CREATED without a trailing newline while every update path writes
`.trim() + '\n'`, so the analyze right after committing a freshly created
AGENTS.md dirtied it purely to append that newline.
- `--no-stats` left the per-cluster `(N symbols)` counts in the skills table,
which are exactly as volatile as the header parenthetical the flag removes.
The stale-index hook recommended plain `gitnexus analyze` — the variant that
rewrites those tracked docs — so an agent following the nudge verbatim reindexed
with the most invasive flags. `formatAnalyzeCommand` takes `indexOnly` and the
three hook call sites (Claude, plugin copy, Antigravity) pass it; the injected
"Index stale?" line and the MCP context resource's `re_index` hint name the same
`--index-only` form. Full `analyze` stays the documented way to refresh the docs
and skills.
Both resolve-analyze-cmd.cjs copies stay byte-identical.
Claude-Session: https://claude.ai/code/session_019d85r7TrMYjWbTUT3pXccS
Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com>
Co-authored-by: Claude Opus 5 (1M context) <noreply@anthropic.com>
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DuduPhudu
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fa31a7d824
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fix: close the nine follow-up review findings from #2856 (routes, receiver typing, truncation honesty) (#2899)
* fix(typescript): a type parameter shadows a declared type of the same name (W2-8)
First item of wave 2, promised to the reviewer on #2856.
`export function unwrap<Result>(value: Result): Result` names the PARAMETER, not
the `interface Result` beside it — tsc resolves both annotations to the
parameter. The type-reference capture that makes a contract answerable ("what
breaks if I remove this field?") had no notion of a parameter binding, so every
annotation mentioning `Result` inside `unwrap` minted a `USES` edge into the
interface, at the same confidence as a real consumer and indistinguishable from
one. Measured on the new fixture: `unwrap` produced TWO false edges while the
genuine consumer produced one.
Blast radius is every generic whose parameter name collides with a declared
type, and the colliding names are ordinary choices for both: `Result`, `Key`,
`Value`, `Item`, `Node`, `Options`, `Config`, `Props`, `State`, `Response`.
TWO HALVES, and the first is why upstream's fix could not reach this. #2833
introduced `bindsTypeParameter` for the CALL-receiver path, where a workspace
`class T` was answering for `<T>`. Reusing it here changed nothing at first, and
the reason is its own documented contract: `@declaration.type-parameters` was
captured for class/interface declarations ONLY, so a generic FUNCTION recorded
no parameter list and the predicate correctly returned false — absence is not
evidence. The data was missing, not the logic. So:
- TYPESCRIPT_SCOPE_QUERY now captures type parameters on `function_declaration`,
`generator_function_declaration` and `type_alias_declaration`;
- the graph bridge consults `bindsTypeParameter` before emitting `USES`.
Both are load-bearing — removing either one fails the fixture.
The fixture carries two controls, because the obvious wrong fix is to stop
emitting: a genuine consumer of the interface must still link, and a generic
whose parameter does NOT collide must still link its real reference. Both are
asserted, and the "genuine consumer" case is asserted FIRST so the absences
below it cannot pass vacuously.
SCHEMA_BUMP 53 -> 54: parse-time capture change. A warm cache replays defs with
no parameter list, so the guard reads nothing and the feature is inert while
looking implemented.
Capture fingerprint re-baselined with justification. NO NEW CAPTURE NAME —
diffing the capture-name sets against the wave-1 branch returns empty; the tag
existed and now fires on more declarations. capture_groups_fp 2338 -> 2371,
fixture_count 151 -> 152, scaling 1.06 < 1.5, and JavaScript's fingerprint does
not move at all, which is the check that this is the TS declaration rules rather
than something broader.
Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
* fix(analyze): close the four false-success paths in the graph-write-collapse guard (W2-6)
Second wave-2 item, promised on #2856. All four were reported; all four
reproduced by reading the code they name.
(a) A SAME-COMMIT RE-RUN REPORTED SUCCESS FOREVER. Every other meta-driven
trigger — schema fingerprint, PDG mode, runner identity, CJK segmentation,
embedding dims — has a block that forces a rebuild before the
`alreadyUpToDate` fast path. `graphWriteCollapsed` had none; `grep -rn` found
writes and no reads. So the one state meaning "most of your edges are gone"
was the one state that repaired itself only if the user happened to pass
`--force`. Now forces a full rebuild, and forcing is right rather than merely
re-running: the persisted graph disagrees with what the pipeline produced, so
an incremental pass over unchanged files would write nothing and re-stamp the
same broken index as fresh.
(b) AN INCREMENTAL RE-RUN ERASED THE STAMP. `saveMeta` is a full atomic
overwrite, and the field was spread in only when the CURRENT run had a
verdict. `undefined` meant two different things at that site — "full run, no
collapse" (a positive all-clear) and "incremental write, not comparable" (no
opinion) — so the second case silently dropped `graph-write-collapsed` from
meta.json while the edges were still missing. Now three-way: stamp on
detection, CLEAR on a healthy full run, CARRY FORWARD when there is no
verdict. That is the shape `branch: branchLabel ?? existingMeta?.branch` two
lines away had all along.
(c) THE SERVER PATH NEVER CONSUMED IT. `analyze-worker-ipc.ts` projects the field
"so a server-side caller sees the same degraded outcome the CLI does" — but
nothing read it, so the comment described an intention and every collapsed
run reported `complete` to the UI and to every API consumer. Now reports
`failed` with the counts and the remedy, matching the CLI, which prints
`Repository indexed INCOMPLETELY` and exits non-zero. A consumer that reads
"complete" will query the index and get confident wrong answers.
(d) --pdg ROWS MASKED TOTAL STRUCTURAL LOSS. `expected` counts the in-memory
graph plus the streamed STRUCTURAL manifest; the streamed PDG layers never
enter `graph.relationshipCount`. But `persisted` was `stats.edges`, a count
of EVERY `CodeRelation` row, and PDG writes into that same table. With 1,000
structural edges expected and 4,000 PDG rows persisted, losing every
structural edge still read `persisted = 4000`, cleared the ratio, and stayed
silent — on exactly the large repos `--pdg` is used for.
Worth recording that the OBVIOUS fix does not work. Padding `expected` with
the PDG rows makes the two universes match but leaves the ratio judging a
minority population: 4,000 of 5,000 still clears 0.5. I wrote that first, and
the test I wrote to prove it failed. Only comparing structural against
structural asks the question the check exists to ask, so `getLbugStats` gains
a `structuralEdges` count excluding `PDG_EDGE_TYPES`. `TAINT_PATH` is
deliberately NOT in that set — it is a whole-program Function→Function edge
persisted by the normal emit, so it is structural and stays counted on both
sides.
`index-freshness-graph-collapse.test.ts` had pinned the masking as correct
(`detectGraphWriteCollapse(1000, 4000)` → undefined, "PDG layers write into
the same table, so persisted > expected is normal"). True about the table,
and it licensed the hole. Replaced with the case that matters and a note on
why the fix is at the caller.
The new `structuralEdges` assertion in `lbug-core-adapter` is there because the
failure mode is silent: the query sits in a try/catch that yields `undefined`,
and `undefined` makes the collapse check decline to compare — so a typo in the
Cypher would throw nothing, fail nothing, and switch the guard off. Verified
against a real LadybugDB and mutation-checked by breaking the query.
Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
* fix(processes): make process selection insertion-order invariant (W2-5)
Third wave-2 item. Reproduced before fixing: two equal three-step flows with
`maxProcesses: 1` select `handleAlpha`; inserting the identical nodes and CALLS
edges in reverse select `handleBeta`. Same repository, same commit, a different
persisted graph — so a filesystem that enumerates differently, or an incremental
run that reorders assembly, silently changes what the tool reports.
Four sorts ranked by score or length alone and returned 0 on a tie.
`Array.prototype.sort` is stable, so a 0 preserves INPUT order, which traces
back to `graph.iterNodes()`. Under `maxProcesses` capping that decided which
`Process` and `STEP_IN_PROCESS` nodes were persisted at all. Each now falls
through to a totally-ordered, content-derived key — node id for entry points,
the joined path for traces.
WHAT IS ACTUALLY VERIFIED, stated precisely because "four fixes" would overclaim:
- the ENTRY-POINT sort is individually mutation-verified;
- the two DEDUP sorts are collectively mutation-verified;
- the TRACE-RANK tiebreak is NOT individually observable, and the source says
so. The dedup sorts already impose a total order on the list that reaches
it, so removing it alone fails nothing. Kept as defence in depth: it cannot
misbehave — it only makes an already-deterministic order explicit — and it
is what stops a change to dedup ordering from silently re-opening this.
Finding that out took two fixtures. The first (three chains, three entry points)
is separated by the entry-point sort before trace ranking is reached, so it never
exercises the trace comparator at all; the second gives ONE entry point two
equal-length branches to different terminals, which is the only shape where the
trace comparator decides. Both are kept — they gate different sites.
The invariance tests assert the INVARIANT rather than any single sort, so they
cover all four sites and any future one without needing to know where they are.
Three assertions: same selection under a cap, identical set uncapped, and
identical ORDER — the last because order is what the cap consumes, so a set-only
assertion would pass while the defect persisted.
Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
* fix(impact): UNKNOWN dominates a mixed candidate set, instead of reporting the known floor (W2-4)
Fourth wave-2 item. The all-UNKNOWN branch here was reasoned about carefully and
is correct — its comment even names the two ways a set can be all-UNKNOWN. The
MIXED case fell straight through it.
`RISK_ORDER` is `['LOW','MEDIUM','HIGH','CRITICAL']` and has no `UNKNOWN` entry,
so `indexOf('UNKNOWN')` is -1 and an UNKNOWN candidate can never win the reduce.
An ambiguous name with one caller-less candidate (UNKNOWN, per the round-1 fix)
beside one single-caller candidate (LOW) reported `maxRisk: 'LOW'` — a confident
floor over a set containing an interpretation nobody measured. That is the same
false-safe the all-UNKNOWN branch exists to prevent, one case over, and it
surfaced in the UI as "Max blast radius N (LOW risk)".
`maxRisk` answers "how bad could this be?", and an unresolved candidate could be
CRITICAL — so any UNKNOWN in the set makes the aggregate UNKNOWN. Narrowing it
that way would normally cost information, so the measured part travels alongside
as `knownMaxRisk`, present only when the two differ: absent on a fully-resolved
set, where it would duplicate `maxRisk`, and absent on a fully-unknown one, where
there is no measured part. A reader gets "at least LOW among what resolved, and
one interpretation could not be walked at all", which is strictly more than
either value alone. The human-readable message says the same thing.
The seed gained a mixed pair because the existing one could not reach this: both
its twins are caller-less, so it only ever exercises the all-UNKNOWN branch —
which is precisely why the gap survived a round of review. Three assertions,
both halves mutation-verified.
`eval-server.ts` needs no change: it renders `result.maxRisk ?? 'UNKNOWN'`, so it
now shows UNKNOWN where it previously showed the floor.
Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
* fix(routes): track ternary polarity in dispatch guards, so a selected verb cannot be inverted (W2-9)
`if ((req.method === 'GET' ? false : true) && pathname === '/api/i')` emitted
`GET /api/i` — the one method that branch guarantees the request does NOT have.
A ternary SELECTS between its arms, so a verb inside one is not reached merely
because the whole condition is truthy, but `findVerbInSubtree` descended into
both arms and returned the first verb it saw. Same inversion `!` produced before
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drdave
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021ac30376
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feat(cli): add a bunx lane so bun-only machines can run gitnexus (#2765)
Some checks failed
CodeQL / Analyze (javascript-typescript) (push) Waiting to run
CodeQL / Analyze (python) (push) Waiting to run
Gitleaks / gitleaks (push) Waiting to run
Publish / Classify release event (push) Waiting to run
Publish / RC guard (marker + release-PR skip) (push) Blocked by required conditions
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Scorecard / Scorecard analysis (push) Waiting to run
Trivy Image Scan / Trivy (gitnexus-cli) (push) Waiting to run
Trivy Image Scan / Trivy (gitnexus-web) (push) Waiting to run
Skill copy sync / shipped skills drift guard (push) Has been cancelled
* feat(cli): add a bunx lane to the runner ladder
The ladder assumed a Node toolchain: global gitnexus, then pnpm dlx or
npx in some order, with npx as the last resort. On a bun-only machine
npm, npx and pnpm are all absent, so every rung fell through to npx and
both the emitted hint and the generated .gitnexus/run.cjs produced a
command the machine could not run at all.
Add bun as a fourth mode, invoked as an install-free bunx one-shot, on
two rungs:
- npm 11+ with no pnpm to fall back on — bunx dodges the same arborist
install crash the pnpm rung exists for (#1939);
- npm and pnpm both absent — previously the dead end described above.
Every pre-existing outcome is preserved: pnpm still wins on npm 11+, npx
still wins on npm < 11, and pnpm still wins over bunx when npm is absent.
Regression tests pin each of those. The bun PATH probe is lazy, so a
machine with a Node toolchain pays no extra scan and the stale-index hook
budget is unchanged.
bunx takes no allow-build equivalent: bun's --trust is a bun add/install
flag that writes trustedDependencies into a project package.json, which a
one-shot has none of, so the argv stays flag-free.
Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_016R9psS9gJ73MRyquoBoPKg
* fix(lbug): restore the prebuilt native binary when install scripts were skipped
Without this the new bunx lane resolves to a command that still fails:
bun skips lifecycle scripts for a bunx fetch, so @ladybugdb/core's
install script never copies lbugjs.node up from its per-platform
sub-package and every native command dead-ends on 'LadybugDB native
binary (lbugjs.node) is missing'.
The existing guidance cannot rescue that case. It offers pnpm
--allow-build, a global install, or adding trustedDependencies to a
project package.json — bunx has no project package.json to add to, no
per-invocation opt-in, and re-extracts the package on every run, so an
out-of-band repair is wiped before the next invocation. In-process
recovery is the only thing that can work.
Recovery is cheap because nothing is actually absent: the binary is
already on disk in @ladybugdb/core-<platform>-<arch>, and the skipped
script only copied it up. Redo that copy (prebuilt only — never a source
build, never a network fetch) before reporting failure. Best-effort by
construction: read-only node_modules, an absent sub-package or an
unsupported platform all fall through to the existing diagnostics
unchanged, which a test pins.
Also covers pnpm dlx without --allow-build and npm --ignore-scripts.
Declare trustedDependencies so a plain `bun install` in this repo
produces a working native binary too — the remedy the error message
already prescribes.
Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_016R9psS9gJ73MRyquoBoPKg
* fix(ai-context): name every install-free runner in the generated bootstrap note
The emitted gitnexus:start block told a reader with no runner yet to run
`npx gitnexus analyze`, falling back to a global npm install. Both name
binaries a bun-only machine does not have, so the generated AGENTS.md and
CLAUDE.md offered it no reachable bootstrap path.
List npx, bunx and pnpm dlx instead of resolving one. The block is
committed, so emitting the command this machine happens to resolve would
make two contributors on different package managers rewrite it at each
other on every analyze — the per-machine churn #1706 removed. Naming all
three keeps the note machine-independent and correct everywhere.
Regenerates this repo's own committed block to match.
Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_016R9psS9gJ73MRyquoBoPKg
* fix(cli): address PR #2765 review — bunx liveness, restore diagnostics, docs
Addresses all five review comments on #2765.
P1 — `hasBun()` was a PATH-existence check only, so a present-but-broken
`bunx` shim (partial uninstall, failed `bun upgrade`) was selected with no
functional validation. Because selecting `bun` also suppresses the npm-11
npx-crash warning, the result was a silent dead end: no diagnostic, and a
`bunx gitnexus@latest analyze` command that only fails at execution time.
Add `probeRuns()` — a real `bunx --version` liveness probe, gated behind the
cheap spawn-free PATH scan so machines with npm/pnpm still pay nothing. It
ignores the output on purpose (a banner or unparseable version still counts
as alive); only a spawn failure, non-zero exit, or timeout rejects. Injectable
via a new `bunRuns` dep so the mode tests stay host-independent.
P2 — the `gitnexus-cli` skill (and both shipped mirrors) still described the
pre-bunx ladder, stranding exactly this PR's audience: a bun-only machine
whose agent bootstraps from that file was told to use npx/npm/pnpm, none of
which exist there. All three copies now name `bunx` in the ladder and the
bootstrap fallback, with a `shipped-skills-sync` fragment assertion so the
gap is CI-caught (these copies are not byte-compared, only the engineering
family is).
P2 — `restorePrebuiltNativeBinary` collapsed every failure into `false`, so an
EACCES/EROFS from `copyFileSync` was indistinguishable from "no prebuilt
sub-package exists". Users on a read-only `node_modules` layer (a baked
container image mounted read-only — a common CI pattern) got the generic
lifecycle-script advice, which cannot fix a non-writable filesystem. Return a
`RestoreOutcome` instead and route `copy-failed` to its own message.
P2 — document that `trustedDependencies` only takes effect for `bun install` /
`pnpm install` run inside this repo: it does nothing for a `bunx` one-shot or
for a consumer's `bun add gitnexus`. The note sits on
`restorePrebuiltNativeBinary` so a future maintainer cannot mistake that
function for redundant and delete the thing the bunx path actually relies on.
P3 — the `binary_missing` bun advice told `bunx` one-shot users to edit a
package.json they do not have, and listed 1 of the 3 packages this package
now trusts. Both repair messages now share one `BUN_REPAIR_LINES` const with
the full package list and a `bun install -g gitnexus` alternative.
Also: shortened the bootstrap note and raised the CLAUDE.md block budget
2900 -> 2950. The note has to name every install-free runner (that is the
point of the bun lane), and main's own growth since this PR's last green CI
had already pushed the generated block over the old ceiling.
Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_015epfxkEMsmHFNVSFQqAkB4
* refactor(cli): simplify the #2765 review fixes
Cleanup pass over the previous commit — no intended behavior change except
the doctor status line noted below.
Reuse: `probeRuns()` duplicated `probeVersion()`'s entire spawn setup — same
argv, timeout, `windowsHide`, and the CVE-2024-27980 Windows-shim workaround —
in a file with two byte-identical committed copies, so the shim rule lived at
four sites. Its docstring's own objection was to the RETURN SHAPE, not to
reuse, so `probeVersion` now returns `{ ran, major, minor }` and `hasBun` reads
`.ran`. Existing callers only read `major`/`minor`, so nothing else changes.
Also dropped a pointless `const runs = () => …` thunk (`&&` already
short-circuits), and deleted a new test that was a character-for-character
duplicate of `falls back to npx when npm is null-absent and pnpm is also
absent` — its cheapest-first-gate rationale moved into that test's comment.
Correctness in the budget comment: the claim that the bun rung is free because
"pnpm is absent there, so its probe never ran" was wrong. `formatAnalyzeCommand`
spawns `pnpm --version` unconditionally when no global `gitnexus` is on PATH —
that spawn IS how pnpm presence is discovered. Real worst case is 5 subprocesses
/ ~8s, and the 8s needs Windows (`shell: true` spawns cmd.exe for an absent
pnpm); on POSIX an absent pnpm ENOENTs in ~1ms. Comment now says that. Likewise
"a machine with npm or pnpm never pays" was wrong for npm 11+ without pnpm —
that IS the rung that pays.
Altitude: `copy-failed` changed only the message text while still returning
`kind: 'binary_missing'`, so `doctor` would have printed "✗ lbugjs.node missing"
directly above a message saying the binary IS present — exactly the
contradiction #2672 removed. Added a `binary_unwritable` kind, a doctor case,
and a `nativeStatusCases` row. The binary-missing message construction moved
out of `checkLbugNative` into `unrestorableBinaryFailure`, typed
`Exclude<RestoreOutcome, 'restored'>` so a new outcome forces a decision
instead of silently inheriting the lifecycle-script advice.
Drift: the trusted-package list was hand-spelled in five places in
native-check.ts, with "matches gitnexus/package.json" asserted only in a
comment. All five now render from one `NATIVE_BUILD_PACKAGES` const (rendered
output is byte-identical), and the test reads the list out of package.json
instead of restating it, so a fourth native package fails the test rather than
silently shipping stale advice.
Finally, replaced the absolute CLAUDE.md block cap with the ratio the two prior
justifications actually appealed to (`< 5465 * 0.55`). Raising 2700 -> 2900 ->
2950 was a ratchet with no ratchet: an absolute cap can only fail on the PR
that adds the character, and the fix is always to nudge the number. Also fixed
a stale runner ladder in skills-steering.test.ts that still omitted bunx.
Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_015epfxkEMsmHFNVSFQqAkB4
---------
Co-authored-by: drdave-flexnteos <revenaugh.david@gmail.com>
Co-authored-by: Claude Opus 5 (1M context) <noreply@anthropic.com>
Co-authored-by: Gergő Magyar <gergomagyar@icloud.com>
Co-authored-by: Gergo Magyar <gergomagyar0@gmail.com>
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azizur100389
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797e4ef8f6
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fix(ai-context): document CLI graph fallbacks (#2803)
* fix(ai-context): document CLI graph fallbacks Teach generated GitNexus guidance to pair mandatory MCP graph checks with repo-scoped CLI fallbacks so agents can keep working when MCP is unavailable. Co-authored-by: Cursor <cursoragent@cursor.com> * style(ai-context): satisfy Prettier --------- Co-authored-by: Cursor <cursoragent@cursor.com> |
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azizur100389
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02ebf8f199 | fix(ai-context): emit compact markdown tables | ||
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ArgonarioD
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1c98e7c6dd |
fix(cli): make .agents/ skill mirror best-effort + exclude from dirty check
Address review findings on PR #2488: - skill-gen.ts: wrap mirror-root mkdir and per-skill mirror writes in try/catch + warn, so a mirror failure (e.g. .agents/skills is a file) no longer aborts canonical community-skill generation or destroys prior output. Mirroring is now a weak side-flow, matching ai-context.ts. - git.ts: exclude .agents/ + .agents/** from isWorkingTreeDirty so a tracked .agents/ dir doesn't permanently defeat the up-to-date fast path. - README + --skip-skills help (en/zh): note skills also mirror to .agents/skills/ when .agents/ exists, and --skip-skills skips both. Tests: +18 covering mirror failure paths (root-is-file, per-skill fail, delete-then-rewrite ordering, namespace-scoped cleanup), dirty-check excludes (real-edit regression, prefix collision, subdir .agents/, non-git/git-missing conservative fallback), gate on file-not-dir, and idempotency. Co-Authored-By: Claude <noreply@anthropic.com> |
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ArgonarioD
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2c5b390d96 |
Merge remote-tracking branch 'upstream/main'
# Conflicts: # gitnexus/src/cli/ai-context.ts # gitnexus/src/cli/skill-gen.ts |
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Gergő Magyar
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a05b501102
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fix(cli): make Claude skills discoverable (#2434)
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ArgonarioD
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c7a9b7efc2 |
feat(cli): mirror skills to .agents/skills/ when .agents/ exists
Some agents prefer repo-local .agents/skills/ over the global install. When .agents/ is present, mirror the standard and generated skills written to .claude/skills/ so those agents serve up-to-date copies. Opt-in via .agents/; absent directory leaves the layout untouched. Co-Authored-By: Claude <noreply@anthropic.com> |
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Gergő Magyar
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78b4077d8a
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feat(impact): opt-in PDG-backed impact mode - statement + inter-procedural slicing, resolved-callee-id soundness, mutation-oracle validated (#2227)
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Gergő Magyar
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7c3d4e6862
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feat(pdg): control dependence — post-dominators + CDG (Ferrante) [M5 #2085] (#2188)
* feat(pdg): add CDG + POST_DOMINATE edge types (M5 #2085) * feat(pdg): post-dominator tree on reverse CFG (M5 #2085) * feat(pdg): Ferrante control-dependence over the post-dom tree (M5 #2085) * feat(pdg): emitFileCdg + optional POST_DOMINATE debug edges (M5 #2085) * feat(pdg): wire CDG emission in-phase + pdgModeMismatch CDG-cap stamp (M5 #2085) * test(pdg): CDG snapshot + end-to-end pipeline answerability (M5 #2085) * fix(review): apply autofix feedback (M5 #2085) * fix(pdg): label CDG edges by controller arm sense, not edge kind (#2188 F1/F2/F4) Tri-review (with Codex as the independent engine) found the CDG 'T'/'F' label was wrong for the commonest control flow: the M1 TS visitor wires a condition's fall-through FALSE arm as `seq`/`loop-back`, but `branchSense` mapped both to 'T', so guard clauses, if-no-else, and loop `break` got 'T' instead of 'F' (F1, P1). The structural CDG edges were correct; only the label — the AC3 "under what condition does X run?" answer — was wrong. - F1: replace edge-kind `branchSense` with controller-arm-sense `labelFor`. An ambiguous fall-through edge (seq/loop-back) takes the COMPLEMENT of its source block's explicit cond-true/cond-false sibling arm. This correctly handles do/while (loop-back = TRUE arm) and inner-if-in-loop (loop-back = FALSE arm) — the ambiguity a kind→label table cannot resolve. Adds real-parser regression tests (the hand-built tests used a fictional cond-false edge and missed it). - F2: correct the false "sound over-approximation that never drops a real dependence" claim in post-dominators.ts — exit-unreachable regions both drop and invent control dependences (latent for the current TS visitor, which keeps EXIT reverse-reachable). Reframe the exit-less-loop test to characterize, not bless, the degenerate behavior. - F4: make the AC2 property-test reference compute post-dominance INDEPENDENTLY (node-removal reachability, no shared code with post-dominators.ts), so a post-dom direction bug can no longer pass both the impl and the reference. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * fix(ci): root-prettier format + run-analyze pdg stamp gains maxCdgEdgesPerFunction (#2085) Two deterministic CI failures from the M5 CDG work: - quality/format: basicblock-roundtrip.test.ts failed CI's root `prettier --check .` (the pre-commit hook uses the gitnexus-local prettier config, which differs); reformatted with the root config. - tests/ubuntu/coverage: run-analyze.test.ts pinned the resolved RepoMeta.pdg shape (DEFAULTS) and the all-zero cap override without the new maxCdgEdgesPerFunction key (default 5000); added it so resolvePdgConfig toEqual and pdgModeMismatch(DEFAULTS) pass. (The stale-test sweep missed this file in PR #2188 — same trap M2 hit.) Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * feat(mcp): add pdg_query tool definition (controls/flows modes) [M6 #2086] * feat(mcp): pdg_query backend — controls (CDG) + flows (REACHING_DEF) + e2e test [M6 #2086] * feat(mcp): document PDG edges + pdg_query (schema, cypher, skill, --pdg-gated ai-context) [M6 #2086] * fix(mcp): correct pdg_query symbol-anchor lower bound + harden inputs [PR #2188 review] Tri-review (Codex + adversarial + correctness lanes) of the M6 pdg_query surface found the symbol-anchor window over-includes a neighbor function's block. The upper bound was widened to the 1-based BasicBlock basis (symEnd+1) but the lower bound was left 0-based, so a block on the line directly above the target function leaked into the result. Shift both bounds +1 ([symStart+1, symEnd+1]) so the window is the function's true block span. Also from the same review: - pdg_query no longer throws on a no-arguments MCP call: the dispatch passes raw `params`, so default it to {} → a clean mode-validation error instead of a TypeError. (`explain` shares this latent pattern — pre-existing follow-up.) - tools.ts: the controls-mode description no longer hard-codes the 'F' branch sense for guards — `if (!ok) return;` rides the predicate's 'T' arm; the guard:true flag is label-agnostic (regex on the dependent block text). Tests: a hand-seeded adjacency regression (verified failing without the lower-bound +1) + a no-arguments validation test. Skill doc updated to document the two-sided [symStart+1, symEnd+1] window. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * fix(mcp): drop always-true anchor conditional in pdg_query [CodeQL #2188] CodeQL alert 756 flagged `...(anchor ? { anchor } : {})` in _pdgQueryImpl as a useless conditional: `anchor` is unconditionally assigned in both the file-path and symbol branches before the return (the not-found/ambiguous/no-layer paths return earlier), so it is always truthy. Drop `| undefined` from the declaration (TypeScript definite-assignment holds across both branches) and emit `anchor` directly. No runtime change — the `anchor` field was already present on every result. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * test(cli): add hasPdg to the noStats bridge expectation [#2188] The M6 work threaded `hasPdg: options.pdg === true` into the AIContextOptions passed to generateAIContextFiles on the --skills regeneration path, but this test's strict .toEqual expectation predated it (4 keys vs 3 → CI failure). Add `hasPdg: false` (the value on this non---pdg path). The assertion stays strict; the #1477 noStats bridging it guards is unchanged. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * refactor(cli): collapse generateGitNexusContent params to an options bag [#2188] The function had grown to 9 positional params; reaching `hasPdg` meant passing six `undefined`s (the M6 review's maintainability flag). Collapse params 3-9 (generatedSkills, groupNames, noStats, skipSkills, runnerPath, defaultBranch, hasPdg) into a `GitNexusContentOptions` object with the defaults moved to destructuring. The body is unchanged (same local names); the single production caller and the test calls become self-documenting named fields. Pure refactor — generated AGENTS.md/CLAUDE.md content is byte-identical. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * fix(cfg): skip CDG for exit-unreachable CFGs (unsound post-dominance) [#2188] M5 review P2: computePostDominators roots only at cfg.exitIndex and nothing enforced that EXIT is reachable from every block. For an entry-reachable region that cannot reach EXIT (a non-terminating loop, or a multi-terminal CFG a future visitor might emit) the EXIT-rooted reverse walk degenerates — it both drops real control dependences and invents spurious ones. Add a pure precondition predicate `isExitReachableFromAllBlocks` (co-located with the algorithm it guards) and gate it in emitFileCdg: a CFG that violates it is skipped for CDG (counted as skippedUnsoundFunctions + one onWarn), while its CFG and REACHING_DEF projections — which do not depend on post-dominance — are kept. A CDG-specific gate, not a widening of isEmitSafeCfg, so the blast radius is exactly the unsound CDG. The current TS visitor always satisfies the precondition (every loop gets a structural header→loopExit edge), so CDG output for real fixtures is unchanged. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * fix(cfg): bound computeControlDependence materialization (heap parity) [#2188] M5 review P2: unlike computeReachingDefs (maxFacts) and the emit-side edge cap, computeControlDependence materialized the full deduped seen/out before emitFileCdg's per-function cap could trim it — O(edges × post-dom depth) heap for a deeply nested function. Add a `maxEdges` ceiling (default 0 = unbounded) returning {edges, truncated}, mirroring computeReachingDefs's {facts, truncated}. The ceiling is checked before pushing a new unique edge, so `truncated` means a genuine overflow (not merely "reached cap"). emitFileCdg passes a FIXED materialization ceiling (8× the default edge cap) — deliberately NOT derived from the runtime edge cap, because CDG's materialization IS the deduped-edge quantity the cap reports on (deriving it would pre-truncate that set and lose the exact dropped count). A ceiling hit is surfaced via onWarn + the truncated flag — never silent. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * refactor(mcp): share resolveBlockAnchor; fix explain's anchor off-by-one [#2188] M6 review P2 (duplication) + the flagged pre-existing _explainImpl correctness follow-up. _pdgQueryImpl and _explainImpl each carried a near-identical symbol↔block anchor resolver that had DRIFTED: pdg_query used the corrected [symStart+1, symEnd+1] window (BasicBlock startLine is 1-based, the symbol span 0-based) while _explainImpl still used [symStart, symEnd] — dropping a taint source on the function's final line AND leaking a neighbor's block on the line directly above. Extract one `resolveBlockAnchor` helper, used by both, that applies the correct window and a single (bare) clause convention (callers compose their own WHERE). This removes ~50 duplicated lines and fixes explain's anchor in one place. A hand-seeded characterization test (taint-explain Block 4) pins both bounds — verified to FAIL on the pre-fix window (it returned the line-10 neighbor instead of the line-15 final-line source). Existing taint-explain + pdg-query suites are unchanged (their fixtures have interior sources/sinks). Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * fix(mcp): pdg_query reports "status unknown" when the layer can't be confirmed [#2188] M6 review P3 (Codex): when meta is UNREADABLE and the bounded global existence probe returns zero rows of the edge type, _pdgQueryImpl asserted "no PDG layer" — but a genuinely edge-free layer (all-linear functions) is indistinguishable from a missing one via that probe. Soften only that fallback path to an inconclusive "PDG layer status unknown — was this repo indexed with --pdg?" note. The meta-stamped path (stamp present, cap absent ⇒ layer truly missing) keeps the definitive "no PDG layer" wording. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * test(mcp): cover pdg_query ambiguous / pagination / Windows-path gaps [#2188] M6 review test-gap follow-ups, all hand-seeded with controlled data: - ambiguous symbol name → status:'ambiguous' + ranked candidates shape (uid/name/filePath/score), never a silent guess; - total/truncated page boundary in both directions (limit below the match count sets truncated with the full total; limit above it omits truncated); - a Windows-style filePath containing ':' resolves and fnLineOf decodes the function-line segment correctly (split-from-right past the drive letter). Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * docs(skills): ship gitnexus-pdg-query skill mirrors + add pdg_query to the guide [#2086] M6 bundled pdg_query into this PR, but the skill shipped only in the canonical gitnexus/skills/ root. Mirror it (byte-identical) to the two hand-maintained roots the sibling taint skill uses — .claude/skills/gitnexus/ and the plugin — so Claude Code + plugin users get it too. Also extend the gitnexus-guide tool reference (all 3 copies, now byte-identical): add a `pdg_query` row + a "Control & data dependence" section mirroring the taint/`explain` section, and reconcile the pre-existing drift where only the .claude copy carried the `check` tool row (a real registered tool) — all three now list it. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * docs(architecture): refresh CFG/PDG section for the full M1–M6 stack [#2086] The PR body had deferred the "ARCHITECTURE docs refresh" to #2086; now that M6 ships here, do it: - MCP tools table gains `explain` and `pdg_query` (were absent). - "Optional CFG/PDG emission" was M1-only; rewrite to cover the whole opt-in stack — M1 CFG, M2 REACHING_DEF, M3/M4 taint, M5 CDG (Ferrante over CHK post-dominators, with the exit-unreachable skip), M6 read surface (pdg_query + explain, anchored + LIMIT-bounded, shared resolveBlockAnchor) — and note the no-Function→BasicBlock-edge join. - LadybugDB schema notes the `--pdg` additions: the `BasicBlock` node table and the CFG/REACHING_DEF/CDG/TAINTED/SANITIZES/TAINT_PATH relation types, kept out of the default VALID_RELATION_TYPES / web schema. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com> |
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Gergő Magyar
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9ff7337f1e
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fix(mcp): rename query/cypher params so Claude Code can call them (#2186)
* fix(mcp): advertise search_query/statement params for query/cypher tools (#2175) Claude Code drops a tool-call argument named exactly 'query', making the query and cypher tools unusable from it. Rename the advertised required parameters to search_query and statement so the client transmits them. Handler-side backward-compat for the legacy 'query' key follows in the next commit. * fix(mcp): accept search_query/statement with legacy query fallback (#2175) Resolve the new advertised param names in the backend while still accepting the legacy 'query' key, so curl/HTTP, other MCP clients, the CLI, the group path, and the internal executeCypher() all keep working. Alias is normalized once at the callTool chokepoint (covers group-forward + search alias); query() and cypher() dual-read defensively. New name wins when both are supplied. Updates the required-error message and adds dual-accept unit + integration coverage. * fix(cli): pass canonical search_query/statement params to query/cypher tools (#2175) Stop the CLI from depending on the deprecated 'query' alias. No user-facing change — the positional args are unchanged and the backend accepts both keys. * fix(mcp): generators advertise search_query in query() examples (#2175) Update the three doc/example generators (ai-context AGENTS/CLAUDE block, skill-gen community skills, resources repo hint) so future analyze runs emit query({search_query: ...}) — the param name Claude Code actually transmits. Tests assert the new form is present and the legacy query({query: form is absent (the #2059 generator-test pattern). * docs(mcp): advertise search_query/statement in skill & guidance examples (#2175) Sync the committed agent-facing docs to the renamed params so a Claude Code agent following them emits the transmittable key: AGENTS.md/CLAUDE.md gitnexus block, the canonical gitnexus/skills/* source and its installed/plugin/cursor mirrors, and the README examples. Scoped rewrite of the two call prefixes only (query({query: -> search_query, cypher({query: -> statement). * style(mcp): prettier line-wrap for #2175 alias-resolution edits * fix(review): uniform search_query precedence + cypher empty guard (#2175) Code-review findings (correctness/adversarial/api-contract/maintainability consensus): - Group-mode query inverted the 'new name wins' rule: the callTool chokepoint backfilled params.query only when empty and the @group-forward read params.query directly, so a both-keys (or whitespace-legacy) group call let the legacy value win — unlike the local path. Replace the hidden param mutation with a self-contained 'search_query ?? query' resolve at the group-forward; precedence is now uniformly new-wins at every consumer site. - cypher() now returns the same friendly required-param error as query() when neither statement nor query is supplied, instead of a raw DB prepare error. - Document the legacy alias as permanent (third-party clients may send query=). Adds group-forward alias tests (both-keys + legacy-only), empty/whitespace search_query, the search-alias path, and the cypher empty-statement guard. * fix(review): non-string alias safety + drop stale chokepoint comment (#2175) Tri-review findings (correctness/adversarial/security + maintainability): - Non-string statement/search_query/query (the MCP envelope is not schema-validated) hit .trim() and threw TypeError to the server boundary instead of a friendly required-param error. Introduce resolveAliasString() (new name wins; non-string -> undefined) used by query(), cypher(), and the group-forward, so all three return the structured error. Empirically verified (123 ?? '' -> 123, (123).trim() throws) — this overrides a critic refutation that mis-read ?? as a string coercion. - Remove the stale query() comment claiming alias resolution happens at a callTool chokepoint; that mutation was removed earlier in this PR — each site resolves the alias itself. - Document GroupToolPort.query's intentionally-narrower required type vs the wider LocalBackend impl. Adds non-string and empty-new-key precedence tests. * fix(mcp): alias falls back to legacy value when new key is blank (#2175) PR #2186 review finding: resolveAliasString used `canonical ?? legacy` (nullish), so an explicitly empty/whitespace new-name value (e.g. {search_query:'', query:'real'}) won and was rejected — discarding a valid legacy value, contradicting the 'new name wins when both supplied' intent. Resolve to the first NON-BLANK string instead (new preferred when it carries a real value, else legacy). Covers query(), cypher(), and the group-forward (all route through the helper); non-string still resolves to a friendly error. Flips the presence-based test and adds whitespace/cypher/group fallback cases. * fix(mcp): drop legacy "query" mention from query/cypher schema descriptions (#2175) PR #2186 review finding: the search_query/statement inputSchema descriptions named the legacy "query" key — the exact arg Claude Code drops — and description text is read by an LLM choosing arguments, weakly nudging it to send "query". Trim the descriptions to their clean form and move the legacy-alias note to a code comment next to the schema (preserved for maintainers / non-CC clients). properties/required unchanged (no `query`). |
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Gergő Magyar
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2dc0cc6398
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fix(mcp): prevent sibling-clone repo ID collisions and correct generated MCP tool names (#2067) | ||
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Gergő Magyar
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8a9b13fc3b
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feat(cli): add .gitnexusrc config and --default-branch for analyze (#243) (#1996)
* feat(cli): add .gitnexusrc config and --default-branch for analyze (#243) Let a repo preconfigure recurring `gitnexus analyze` options via a project-local `.gitnexusrc` (JSON) plus a new `--default-branch` flag, so projects on `develop`/`master` no longer get the generated regression example rewritten to `base_ref: "main"` on every analyze run. - New `cli/analyze-config.ts`: locate/parse/validate `.gitnexusrc` (flat + nested `analyze` form, alias mapping, fail-closed on unknown keys / bad types / hidden chars), merge with CLI (CLI overrides config), and resolve the default branch (CLI > config defaultBranch/branch > auto-detected origin/HEAD > "main"). - `getDefaultBranch()` in storage/git.ts (best-effort, local-only, no network). - Thread `defaultBranch` through analyze -> run-analyze -> ai-context so the generated regression-compare example uses the configured branch, JSON-escaped; the --skills re-generation path uses the same branch. - `skipContextFiles`/`skipAiContext` alias `skipAgentsMd` (block only, does not imply skipSkills); `indexOnly` stays the stronger "skip all injection". - README + CLI help; unit tests for the config module and end-to-end wiring tests that fail if config is parsed but not threaded into analyze/context. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * fix(cli): harden .gitnexusrc against Markdown injection and stale base_ref (#243) Addresses the tri-review findings on PR #1996. - P1 (Markdown injection into generated AGENTS.md/CLAUDE.md): reject the backtick in validateBranchName (covers --default-branch, .gitnexusrc, and the origin/HEAD auto-detect via sanitizeDetectedBranch) and strip it at the ai-context sink (markdownSafeBranch); reject Markdown-significant chars (` * [ ] < >) in the config `name` (it lands in generated bold/code-spans), while still allowing `_ . - /`. Corrected the false "can't break the code span" comment. - P2 (configured defaultBranch silently no-ops on an up-to-date repo): on the alreadyUpToDate fast path, surgically refresh only the `base_ref:` line in AGENTS.md/CLAUDE.md (refreshBaseRefLine), preserving the rest of the block incl. --skills community rows; no-op when unchanged. - P3: gate the .gitnexusrc key lookup with Object.hasOwn so inherited keys (__proto__, constructor, …) hit the actionable "Unknown key" error. - Cleanups: strip a leading UTF-8 BOM before JSON.parse; give --default-branch CLI validation its own `default-branch-invalid` recovery hint; drop the dead `options.defaultBranch` write and the now-redundant `options?.` chaining. - Tests: backtick rejection + even-backtick generated output, 255-char branch bound, config `name` Markdown rejection, __proto__ → Unknown key, BOM, mergeAnalyzeOptions omits defaultBranch, willGenerateContext suppression, and the fast-path base_ref refresh. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com> |
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Gergő Magyar
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f885330b34
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fix(cli): steer docs, skills, and hooks through a CLI-neutral project-local runner (#1939) (#1945)
* fix(cli): steer npm 11 users away from npx install crash (#1939) Prefer global gitnexus or pnpm dlx in hooks and generated AI context, warn when npm 11.x would use the broken npx path, and document workarounds for the arborist node.target null failure mode. Co-authored-by: Cursor <cursoragent@cursor.com> * test(hooks): stage resolve-analyze-cmd.cjs for antigravity adapter; harden load checks The antigravity adapter gained a top-level require('./resolve-analyze-cmd.cjs') but stageAdapter() did not copy it, so the spawned adapter crashed with MODULE_NOT_FOUND. Three load-sensitive tests failed; four silent-path tests false-passed on empty stdout. Stage the helper alongside the other sibling helpers, and assert status===0 and no MODULE_NOT_FOUND on the four silent-path tests so a non-loading hook can never pass green again. Force a deterministic invocation mode in the stale-index test so the emitted analyze command no longer varies by CI-runner PATH. Co-authored-by: Cursor <cursoragent@cursor.com> * fix(cli): standardize invocation hints on gitnexus@latest; single-source CJS helper NPX_REF becomes a literal `gitnexus@latest` in resolve-invocation.ts, dropping the package.json require and the module-load throw (a malformed/absent version can no longer crash any CLI command at import). The safety this PR delivers is the install method steered to (global / pnpm dlx), not a pinned gitnexus version, and the in-repo CJS mirror already degraded to `latest` once copied outside the package. Make the two resolve-analyze-cmd.cjs copies byte-identical and add a parity test that fails on drift. The separate, version-pinned NPX_REF that setup.ts writes into the MCP server registration is intentional and left unchanged. Co-authored-by: Cursor <cursoragent@cursor.com> * perf(cli): move npm-11 npx warning off module load; memoize invocation mode warnIfNpm11NpxRisk() ran at index.ts module load, so every CLI invocation (including the `gitnexus mcp` stdio hot path) paid which/where + npm --version spawns — against the lazy-startup/MCP-stdout discipline (#207, #1383). Move the call into analyzeCommand, after the ensureHeap() re-exec guard, so it fires once in the working process and only for `analyze`. Memoize the PATH-probe-derived invocation mode (the GITNEXUS_INVOCATION override stays uncached) so repeated callers don't re-probe, and add a test-only reset so the cache + once-only warning flag don't leak across the unit suite. Covers the mode!=='npx', npm<11, and npm-absent suppression branches. Co-authored-by: Cursor <cursoragent@cursor.com> * fix(cli): detect .exe/extensionless global gitnexus shims on Windows The winGitnexusWrapper branch only matched .cmd/.bat, so a global gitnexus installed by Volta or scoop (a .exe or an extensionless shim) was missed and the hint fell back to pnpm/npx. Accept .exe and treat any non-empty `where` hit as on-PATH (the emitted hint is `gitnexus analyze` regardless of which shim resolves it). Mirror the change into both resolve-analyze-cmd.cjs copies so the TS source and the byte-identical hook mirrors stay in sync. Add Windows-mocked test cases (.exe-only, extensionless, .cmd preference, CRLF stripping) and register resolve-invocation.test.ts in cross-platform-tests.ts so the windows-latest runner exercises the branch. Co-authored-by: Cursor <cursoragent@cursor.com> * fix(cli): emit fixed pnpm dlx analyze command in generated AGENTS.md/CLAUDE.md ai-context baked a machine-resolved command (formatAnalyzeCommand) into git-tracked AGENTS.md/CLAUDE.md, so the stale-index hint varied per machine and churned across branches (the #1706 class). Emit the fixed string `pnpm dlx gitnexus@latest analyze` instead: committed AI-context is the most authoritative instruction an agent reads, so it must name an install-free, crash-free method — never `npx`, the npm-11 path #1939 steers away from. formatAnalyzeCommand stays exported and unit-tested in resolve-invocation.ts (it still mirrors the two .cjs hook copies); ai-context just no longer calls it. Co-authored-by: Cursor <cursoragent@cursor.com> * refactor(cli): unify hook-helper copy into one non-silent routine installClaudeCodeHooks copied its four hook helpers in separate try/catch blocks that silently swallowed failures, while installAntigravityHooks recorded an error per failed copy. Extract one copyHookHelpers(srcDir, destDir, label, result) with a single canonical helper list (including resolve-analyze-cmd.cjs) and the antigravity loop's error-reporting policy, and use it from both paths so a missing helper surfaces as a setup error instead of a silent runtime crash. Assert both the Claude and Antigravity install paths co-locate resolve-analyze-cmd.cjs next to the adapter, and that a failed copy records an error rather than passing silently. Co-authored-by: Cursor <cursoragent@cursor.com> * docs(cli): reattach installClaudeCodeHooks JSDoc after helper extraction The extracted HOOK_HELPERS/copyHookHelpers block landed between the installClaudeCodeHooks JSDoc and its function, leaving the doc reading as if it described the helper list. Move the block above the doc so it documents the function again. No behavior change. Co-authored-by: Cursor <cursoragent@cursor.com> * test(cli): enforce TS<->CJS invocation parity and guard CLI startup posture Tier-2 review found two in-scope gaps in the #1945 follow-up: - The "mirrors resolve-invocation.ts / test enforces parity" comments overclaimed: the parity test only compared the two .cjs copies to each other, so the TS source and the CJS hook copies could silently drift (NPX_REF, the per-mode command, and the Windows shim regex were hand-edited in all three this PR). Add TS<->CJS value parity (NPX_REF + formatAnalyzeCommand for every forced mode) and a source-level shim-regex parity check, and make the mirror comments accurately describe what is enforced. - No test locked the R3/R4 startup posture, so re-adding warnIfNpm11NpxRisk() (or any resolve-invocation import) at index.ts module scope -- the #207/#1383 lazy-startup regression -- would pass CI. Add a guard asserting index.ts has no module-load invocation probe and the warning is wired into analyzeCommand. Co-authored-by: Cursor <cursoragent@cursor.com> * refactor(cli): collapse npx-invocation resolver to one source of truth PR #1945 carried the gitnexus/pnpm/npx selection in three hand-synced places — the canonical hook helper, its byte-identical plugin copy, and a full TypeScript re-implementation in resolve-invocation.ts — kept in lockstep by per-mode-command and regex-extracted-by-regex parity tests. The TS formatAnalyzeCommand had no production caller (ai-context emits a fixed string), and the module memoized + exposed a test-only reset for a "repeated callers" case that has exactly one caller. Make hooks/claude/resolve-analyze-cmd.cjs the single source: extract the Windows-shim line-picking into a pure, exported pickPathMatch() and add an injectable probe to resolveInvocationMode() so the shipped logic is testable without spawning or global mocks. resolve-invocation.ts (118 -> 59 lines) now consumes that cjs via createRequire for resolveInvocationMode/NPX_REF and adds only the CLI-only npm-version probe and warning; the relative path resolves identically from src/cli/ (tsx, vitest) and dist/cli/ (shipped, hooks/ is a published sibling of dist/). Tests exercise the real shipped artifact, the NPX_REF/mode-command parity scaffolding is dropped (one implementation can't drift), and parity narrows to the two cjs copies staying byte-identical. No behavior change: hook stale-index hints and the analyze warning are byte-identical; the pre-existing setup.ts resolveGitnexusBin is untouched. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * fix(cli): bound stale-index hook PATH probe under the hook budget (U1) The PostToolUse stale-index hint calls formatAnalyzeCommand(), which probes which/where; named PROBE_TIMEOUT_MS=2000 keeps git rev-parse (~3s) + up to two probes well under Claude Code's 10s hook timeout while preserving the machine-correct hint. Byte-identical in the plugin copy. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * fix(cli): steer generated cross-repo group commands off npx (#1939) (U2) The Cross-Repo Groups block in generated AGENTS.md/CLAUDE.md still emitted bare 'npx gitnexus group ...', funneling npm-11 users into the arborist crash; switch to fixed 'pnpm dlx gitnexus@latest group ...'. Export generateGitNexusContent and add a group-branch test asserting no 'npx gitnexus' literal survives. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * docs: align steering guidance on pnpm dlx gitnexus@latest (U3) README troubleshooting uses gitnexus@latest; the repo's own committed CLAUDE.md/AGENTS.md stale-index hint now matches the generated output (pnpm dlx gitnexus@latest analyze) so the repo dogfoods the fix. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * test(hooks): assert exact @latest analyze command and pin invocation mode (U4) Drop dead PKG_VERSION/NPX_REF version-pinned constants; the cjs always emits gitnexus@latest, so assert exact toContain(...) instead of the /@\\S+/ wildcard; pin GITNEXUS_INVOCATION in the --embeddings tests for host-independent determinism. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * test(cli): cover resolver warn/edge branches; document probe seam (U5) Add coverage for the gitnexus-mode warn suppression, getNpmMajorVersion edge inputs (empty/pre-release/non-numeric), and the Windows non-wrapper pickPathMatch branch; widen the InvocationResolver interface to document the optional probe param. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * fix(cli): lower hook PATH-probe timeout to 1000ms (U1) In a linked worktree the stale-index hook runs git rev-parse --git-common-dir (~2s) + rev-parse HEAD (~3s) before up to two PATH probes; PROBE_TIMEOUT_MS=1000 holds the worst case near ~7s under Claude Code's 10s hook budget (was 2000, ~1s headroom). Byte-identical in the plugin copy. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * fix(cli): fail closed in gitnexus setup on missing required hook helper/adapter (U2) copyHookHelpers now returns the failed REQUIRED helpers (the .cjs trio; win-rm-list-json.ps1 stays best-effort since it fails open). Both install paths skip hook registration with an actionable error when a required helper failed; the Claude path also gains the adapter-existence guard the Antigravity path already had. Prevents registering a hook that crashes MODULE_NOT_FOUND on every tool event. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * fix(skills): steer committed skill files off npx to pnpm dlx gitnexus@latest (U3) All 26 committed skill-file copies (gitnexus/skills, .claude, plugin, cursor) used 'npx gitnexus analyze', contradicting the generated freshness line and funneling npm-11 users into the arborist crash. Replace with 'pnpm dlx gitnexus@latest analyze'; add a regression guard (skills-steering.test.ts) that globs all four locations and fails if any reintroduces it. The cli skill's non-analyze npx subcommands (status/clean/list/wiki) are left as-is (out of the analyze-funnel scope). Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * fix(cli): guard resolver import shape; assert group-impact steering (U4) Add a load-time guard on the createRequire(resolve-analyze-cmd.cjs) cast so a drifted/renamed cjs export fails loudly at module load instead of as a late TypeError in warnIfNpm11NpxRisk. Add the missing 'group impact' assertion to the ai-context Cross-Repo Groups test, and a resolver-contract test. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * fix(cli): auto-select invocation path with pnpm --allow-build (#1939) Probe npm/pnpm versions and PATH to pick a working analyze command without user configuration: global gitnexus first, pnpm dlx with --allow-build on npm 11+ (Ladybug native scripts), npx on npm 10 and earlier. Update docs, skills, and tests to match the canonical install-free command. Co-authored-by: Cursor <cursoragent@cursor.com> * fix(cli): place pnpm --allow-build before dlx, repair version-injection seam (#1939) The auto-selected install command emitted `pnpm dlx --allow-build=… analyze`, but pnpm < 10.14 keeps `dlx` in its argv escape list, so flags placed *after* `dlx` are parsed as package specs and rejected (ERR_PNPM_SPEC_NOT_SUPPORTED) on pnpm 10.2–10.13.x — strictly worse than the bare command. Move the flags before `dlx` (the position pnpm has honored since 10.2.0) in both byte-identical hook copies, the committed AGENTS.md / CLAUDE.md, and every skill tree. Also repairs the CI-red resolveInvocationMode seam: injecting `{ npmMajor: null }` to simulate an absent npm fell through `??` to the host's real `npm --version` (npm 10.x on the CI runners → routed 'npx' instead of 'pnpm'). Use an `'npmMajor' in deps` sentinel so an injected null is honored, drop the dead parseMajorVersion guard, and gate the flags on pnpm >= 10.2 via a single minor-aware probeVersion spawn (skipped for committed docs). Align the TS getNpmMajorVersion timeout to the 1s hook budget and strengthen the skills-steering guard with a pre-dlx positive assertion plus a post-dlx regression check. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * docs: add npm-11 pnpm caveat to README Quick Starts (#1939) The root, package, and cursor-integration README Quick Starts still steered first-contact users to bare `npx gitnexus analyze` — the exact npm 11.x arborist install crash issue #1939 names as a funnel. Add a one-line pnpm `--allow-build … dlx` caveat (keeping the simple npx default for npm<=10 / pnpm / yarn users); the package README points to its existing npm-11 workaround section. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * docs(skills): route every gitnexus-cli command off npx to pnpm dlx (#1939) The gitnexus-cli skill demonstrated analyze via `pnpm --allow-build … dlx` but still showed status/clean/wiki/list via bare `npx gitnexus` — the same package, the same npm-11 crash-prone install path — and its header claimed "all commands work via npx". Convert every subcommand to the pnpm form across all three skill copies and reconcile the header. Broaden the skills-steering guard to forbid any `npx gitnexus` command in the cli-skill copies. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * perf(hook): probe pnpm once on the stale-index path (#1939) The stale-index hook resolved pnpm twice — `which pnpm` for mode selection then `pnpm --version` for the allow-build gate — two spawns for one tool in a ~9s/10s budget. Capture the version once in formatAnalyzeCommand and thread it through the existing deps seam (a successful `pnpm --version` proves presence), sharing a memoized PATH probe with resolveInvocationMode. Add explicit pnpm 10.0-suppress / 10.2-emit boundary tests and relabel the unknown-minor case. Both byte-identical cjs copies updated together. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * fix(setup): single-quote POSIX hook command + assert cliPath patch applied (#1939) The hook `command` written into editor settings is shell-evaluated; the double-quoted `node "<path>"` form left `$`, backtick, and other metacharacters live in an adversarial $HOME. Single-quote the path on POSIX (Windows keeps the double-quoted form — those chars are illegal in Windows filenames). Also assert the cliPath source-literal replace() actually matched, recording an actionable error on drift instead of silently shipping a hook with an unresolved relative path. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * test(setup): normalize expected hook path for the Windows runner (#1939) The new POSIX-escaping test built its expected hook path with path.join, which emits backslashes on the Windows runner, while setup.ts forward-slash- normalizes the path before quoting — so `expect(cmd).toBe(node '<path>')` mismatched on tests/windows-latest. Normalize the expected path the same way. Production code was already correct; only the test's expected value was platform-fragile. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * fix(cli): steer docs/skills via a project-local runner, not a pnpm default (#1939) The prior approach hardcoded `pnpm --allow-build=… dlx gitnexus@latest <cmd>` into every committed skill + the generated AGENTS.md/CLAUDE.md, which assumes pnpm is installed. Replace it with a CLI-neutral project-local runner: - `gitnexus analyze` drops `.gitnexus/run.cjs` (a copy of the canonical `resolve-analyze-cmd.cjs`, which gains `buildRunnerArgv` + a `require.main` exec tail) next to the index. Docs/skills reference `node .gitnexus/run.cjs <cmd>`, which auto-selects the runner (global `gitnexus` → `pnpm dlx` → `npx`) at call time — no package-manager assumption. README first-run + an inline bootstrap note stay universal `npx gitnexus analyze`. - The exec tail uses `shell` on Windows so `.cmd`/`.ps1`/`.exe` shims resolve (execFileSync can't otherwise; Node blocks `.cmd` without a shell, CVE-2024-27980), and prints a diagnostic instead of a silent exit 1. Tests: runner exec-tail (real spawn, exit-code propagation + ENOENT diagnostic), copy-failure graceful degradation, and per-subcommand routing + pnpm-fallback vacuity guards. The generated CLAUDE.md block stays under the #856 token budget. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * fix(cli): resolve Windows .cmd version probes so pnpm steering fires (#1939) probeVersion (and the TS getNpmMajorVersion mirror) spawned npm/pnpm --version via execFileSync with no shell, so on Windows the .cmd shims ENOENT'd, the probe reported a present tool as absent, and the stale-index hook recommended the npx crash path #1939 exists to avoid. Add shell: process.platform === 'win32' to the version probes (the exec tail already does this). Parse the first version-shaped line so a Corepack/notice banner on stdout no longer defeats the parse. Carry pnpm presence separately from version so a present-but-unparseable pnpm still selects pnpm. Drop the dead probe ?? resolveOnPath coalesce. Cover resolve-analyze-cmd.cjs (+ plugin twin) with the shell-injection and windowsHide source-regression guards. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * fix(cli): widen pnpm allow-build for the --embeddings=N equals form (#1945) buildRunnerArgv detected embeddings via gitnexusArgs.includes('--embeddings'), which missed the equals form (--embeddings=5000) that Commander also accepts, dropping --allow-build=onnxruntime-node on pnpm 10.2+. Match both forms. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * test(cli): cover the runner exec-tail Windows shell branch on CI (#1945) runner-exec-tail.test.ts was POSIX-only and unregistered in cross-platform-tests.ts, so the run.cjs Windows shell:true exec branch ran on no platform despite the file comment claiming windows-latest covered it. Add a .cmd-shim it.skipIf(onPosix) case and register the file in SPAWN_CLI so the windows-latest job runs it. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * docs: fix broken troubleshooting anchor in gitnexus README (#1945) The npm-11 quick-start note linked to #npx-gitnexus-crashes-with-nodetarget-is-null-npm-11, which matches no heading; the actual troubleshooting heading slugifies to #cannot-destructure-property-package-of-nodetarget-as-it-is-null. Repoint the link. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * test(hooks): guard resolve-analyze-cmd.cjs in antigravity e2e sanity check (#1945) The antigravity adapter top-level require()s resolve-analyze-cmd.cjs, but the beforeAll helper-presence loop did not check for it — a failed copy would surface as noisy MODULE_NOT_FOUND in downstream tests instead of the intended actionable 'Helper not installed' error. Add it to the loop. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * docs(skills): tie a missing-runner Cannot-find-module error to recovery (#1945) Generated CLAUDE.md/AGENTS.md make `node .gitnexus/run.cjs` the primary command, but the runner is gitignored, so a fresh clone or git clean leaves an agent facing a raw MODULE_NOT_FOUND. The CLAUDE.md block is token-budget-capped (#856), so the recovery guidance lives in the cli skill (its documented home): the bootstrap note now names the `Cannot find module` error and points at `npx gitnexus analyze` to (re)generate the runner. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * refactor(cli): disambiguate the MCP-pinned ref from the @latest hint (#1945) setup.ts and resolve-analyze-cmd.cjs both exported a constant named NPX_REF with different values (version-pinned for the persisted MCP entry vs. gitnexus@latest for hints). Rename setup.ts's module-private constant to MCP_PINNED_REF (value and behavior unchanged — the MCP pin stays pinned), leaving the cjs hint ref and its re-export alone. Also route the createRequire cast through 'unknown' so it reads as an explicit narrowing to the subset this module uses rather than a claim about the cjs's full export shape. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> --------- Co-authored-by: Cursor <cursoragent@cursor.com> Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com> |
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Emmanuel
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954b184248
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fix(cli): apply --no-stats to keep-marker stats line (#1706) (#1765)
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* fix(cli): apply --no-stats to keep-marker stats line (#1706) The keep-marker branch of upsertGitNexusSection rebuilt the index-summary line on every analyze and always re-injected the volatile counts, ignoring --no-stats. For teams that commit a trimmed AGENTS.md/CLAUDE.md with a gitnexus:keep marker, that produced recurring no-value merge conflicts — exactly what --no-stats exists to prevent. Thread noStats into upsertGitNexusSection. Under --no-stats the keep-path stats line becomes "Indexed as **<name>**" with no (N symbols, ...) parenthetical; the project name still refreshes so renames propagate. The statsPattern parenthetical is now optional so a count-free line left by a prior --no-stats run still matches. * test(cli): cover count-return and AGENTS.md parity for --no-stats keep path Addresses review findings F1 and F2 on PR #1765: - F1: add a test that counts RETURN when --no-stats is dropped after a prior count-free run — guards against the flag becoming sticky. - F2: extend the noStats+keep "drops the volatile counts" test to assert AGENTS.md alongside CLAUDE.md, so a future asymmetry between the two upsertGitNexusSection call sites is caught. --------- Co-authored-by: Emmanuel Alawode <platforms@chowbea.com> Co-authored-by: Gergő Magyar <gergomagyar@icloud.com> |
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RezaAlmiro
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a3eef48ce3
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fix(cli): make --no-stats actually omit volatile counts (#1477) (#1478)
* fix(cli): make --no-stats actually omit volatile counts (#1477) Closes #1477. The `--no-stats` flag on `gitnexus analyze` was advertised as "Omit volatile file/symbol counts from AGENTS.md and CLAUDE.md" but had no effect: every reindex still rewrote the markdown with fresh count phrases, producing chore-commit churn on every run — the exact problem the flag was added to solve in #704. Root cause is commander.js negation-flag semantics. `.option( '--no-stats', ...)` registers the option under the accessor `stats` (boolean, default `true`; `false` when the flag is passed), NOT `noStats`. The two action-handler reads in `analyze.ts` (lines 414 and 500 pre-fix) read `options?.noStats`, which is always `undefined`, so the `noStats` payload always reached `runFullAnalysis` / `generateAIContextFiles` as `undefined`/falsy and the count branch in the template always fired. Fixed by replacing `options?.noStats` with `options?.stats === false` at both reads. The strict `=== false` check (rather than `!options?.stats`) means absent options or absent `.stats` field fall through as no-stats=false, preserving the documented default-on behaviour. Also updated the `AnalyzeOptions` interface to declare `stats?: boolean` (matching commander's actual output) with a JSDoc explaining the negation, since the prior `noStats?: boolean` shape was a static-type misrepresentation of what commander provides at runtime. Internal call sites that re-pack `{ noStats: ... }` for downstream consumers (`run-analyze.ts`, `ai-context.ts`) keep their existing field name — those interfaces are not commander- shaped, so `noStats` is the correct name there. ## Regression tests Two new unit tests in `test/unit/ai-context.test.ts`: * `omits volatile counts when noStats option is set (#1477)` — asserts the count parenthetical is absent from both CLAUDE.md and AGENTS.md when `noStats: true` is passed. * `preserves volatile counts when noStats is not set (default)` — documents the default-on path so a future refactor can't silently flip the default. Both call `generateAIContextFiles` directly with distinctive numbers that would unmistakably leak through if the omit branch is broken. ## Manual verification * `vitest run test/unit/ai-context.test.ts` → 13/13 pass (11 prior + 2 new). * Verified before-fix behaviour by checking out main, running `npx gitnexus analyze --no-stats` against an indexed repo, and observing the count phrase still present. Re-running on the fix branch with the same flag strips the phrase as documented. Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com> * chore(autofix): apply prettier + eslint fixes via /autofix command * fix(cli): resolve merge conflict markers in analyze.ts (PR #1478) Remove leftover conflict hunks from main merge; keep commander stats shape (stats?: boolean), wire noStats: options?.stats === false into runFullAnalysis and generateAIContextFiles, and retain indexOnly / skipSkills / skipAgentsMd wiring from main. Co-authored-by: Cursor <cursoragent@cursor.com> * test(cli): cover analyzeCommand → runFullAnalysis noStats bridge (#1477) Assert commander-shaped options.stats maps to the internal noStats payload (including explicit true/false and skipAgentsMd combination) so the CLI bridge cannot regress without failing tests. Co-authored-by: Cursor <cursoragent@cursor.com> * test(cli): cover AGENTS.md default stats + skills noStats bridge (#1478) - Assert volatile stats phrase in both CLAUDE.md and AGENTS.md when noStats is omitted - Add bridge test for --skills regeneration path with stats:false → generateAIContextFiles noStats - Note shared noStats expression beside skills-path call; stub process.exit for full analyze path Co-authored-by: Cursor <cursoragent@cursor.com> --------- Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com> Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Gergő Magyar <gergomagyar@icloud.com> Co-authored-by: Cursor <cursoragent@cursor.com> |
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Dennis Palatov
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6229417bd5
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feat: gitnexus:keep marker preserves custom context sections (resubmit of #605) (#1508)
* feat: gitnexus:keep marker preserves custom context sections When <!-- gitnexus:keep --> is present inside the gitnexus block, analyze only updates the stats line instead of replacing the entire section with the verbose template. Lets users maintain lean custom context without it being overwritten on every reindex. Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com> * feat: improve gitnexus:keep marker to reliably preserve custom sections The `<!-- gitnexus:keep -->` marker inside a GitNexus block tells `analyze` to only update the stats line (node/edge/flow counts) while preserving the user's custom layout. This lets teams trim the verbose default template to a lean format without having it overwritten on every reindex. Changes: - Broaden stats-line regex to match both "Indexed as" and "indexed by GitNexus as" formats - Improve stats extraction from generated content (prefer structured match over greedy parentheses) - If keep marker is present but no stats line found, preserve the section as-is instead of falling through to full replace - Add tests for keep preservation and no-keep replacement Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com> * fix: address PR #1508 review findings (F1-F5) Refactor the keep-marker stats-update path and close the test-coverage gaps surfaced by the production-readiness review. ## Findings 2 + 3 (high) — fragile extraction → silent corruption Stop re-extracting `newName` (first `**bold**`) and `newStats` (first `(...)`, with fallback) from generated content. Both are structurally fragile: - F2: newName silently picks the wrong value if the template ever emits bold text before the project-name line (no current bug; an unstated contract with no enforcement) - F3: newStats fallback `\(([^)]+)\)` matches `({target: "symbolName", direction: "upstream"})` from the Always-Do bullet when `noStats: true` suppresses the canonical stats line, silently corrupting the stats output Fix: pass `projectName: string` and `stats: RepoStats` directly into `upsertGitNexusSection`. Build the stats line from those values. Both callers in `generateAIContextFiles` already have them in scope. ## Finding 1 (high) — misleading return value When a keep marker is present but no stats line matches the pattern, the function previously returned `'updated'` without writing, producing `CLAUDE.md (updated)` in CLI output for a file that was not touched. Add a distinct `'preserved'` return variant; CLI now reports `CLAUDE.md (preserved)` honestly. ## Finding 4 (medium) — unanchored stats regex `/(?:Indexed as|...) \*\*[^*]+\*\* \([^)]+\)/` could match prose embedded mid-paragraph in user content (e.g. "you'll see it Indexed as **Foo** (note: ...)"). Anchor with `^...$` plus the `m` flag so only standalone stats lines match. ## Finding 5 — test coverage gaps Seven new tests, each cross-referenced to the review finding: - keep marker OUTSIDE the GitNexus section has no effect - AGENTS.md keep path preserves custom layout (parity with CLAUDE.md) - idempotent: second run produces byte-identical output - CRLF file with keep marker: stats line updates correctly - noStats + keep marker: not corrupted by Always-Do tuple text (F3 regression guard) - returns 'preserved' (not 'updated') when no stats line matches (F1 regression guard) - project name with markdown punctuation (hyphens/slash/dot) lands intact All 23 ai-context tests pass; typecheck, prettier, eslint clean. * docs(ai-context): address PR #1508 review findings on keep-marker path - Clarify that noStats affects generated template only, not keep-section stats updates - Fix stats-line regex comment to match behavior (no end anchor; trailing suffix kept) - Assert '. MCP tools.' survives stats replacement in preserve-custom-section test - Document LF normalization when rewriting CRLF seed in keep-marker CRLF test Co-authored-by: Cursor <cursoragent@cursor.com> --------- Co-authored-by: Claude Opus 4.6 (1M context) <noreply@anthropic.com> Co-authored-by: dp-web4 <dp@web4.ai> Co-authored-by: Gergő Magyar <gergomagyar@icloud.com> Co-authored-by: Cursor <cursoragent@cursor.com> |
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achianuri
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fdf1effb2a
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feat(cli): add --skip-skills and --index-only flags to analyze (resubmit of #742) (#1485)
* feat(cli): add --skip-skills and --index-only flags to analyze command The `installSkills()` call in `generateAIContextFiles()` runs unconditionally, injecting 6 skill files into `.claude/skills/gitnexus/` even when `--skip-agents-md` is passed. This is problematic for bulk indexing operations on read-only mirrors or third-party repos. Add two new flags: - `--skip-skills`: suppress standard GitNexus skill file injection - `--index-only`: pure index mode that suppresses all file injection (AGENTS.md, CLAUDE.md, and skills), writing only to `.gitnexus/` This gives users three levels of control: - `--skip-agents-md` — suppress only root context files - `--skip-skills` — suppress only skill injection - `--index-only` — suppress everything (pure indexing) Discovery context: while bulk-indexing 176 repos with `--skip-agents-md`, all 144 indexed repos were contaminated with `.claude/skills/gitnexus/` files requiring manual cleanup. * fix(cli): address PR #742 review — gate community skills, drop dangling refs, add tests Bot review (#742) flagged three issues with the original commit: 1. `--index-only --skills` still wrote community-derived skill files to `.claude/skills/generated/`. The `--skills` branch in analyze.ts was not gated by `skipAll`, so the "skip all file injection" contract was violated. Gate `generateSkillFiles()` with `!skipAll` so `--index-only` truly wins over `--skills`. 2. `--skip-skills` without `--skip-agents-md` produced AGENTS.md / CLAUDE.md that still referenced `.claude/skills/gitnexus/*/SKILL.md` files that were never installed — every agent load incurred 6 failed reads. Pass `skipSkills` through to `generateGitNexusContent()` and omit the standard-skill rows (and the entire `## CLI` heading when the table is empty). Community skills, when present via `--skills`, are unaffected. 3. No filesystem tests for `skipSkills` / `indexOnly`. Add three regression guards to `test/unit/ai-context.test.ts`: - `.claude/skills/gitnexus/` is NOT created when skipSkills=true - Nothing is written when both skipAgentsMd and skipSkills are true (the resolved-flag state from --index-only) - AGENTS.md/CLAUDE.md routing table omits standard skill references when skipSkills=true, but preserves the load-bearing imperative sections (Always Do / Never Do / Resources) * test(cli): PR 1485 review follow-ups (help text, gate test, --skip-skills docs) - Assert --skip-skills and --index-only in analyze --help (skip-git-cli.test.ts). - Export shouldGenerateCommunitySkillFiles; unit-test index-only+skills gate. - Clarify --skip-skills does not suppress --skills community files; --index-only for full skip. Co-authored-by: Cursor <cursoragent@cursor.com> * fix(cli): warn when --index-only silently overrides --skills Address review findings on PR 1485 follow-ups: - analyze.ts emits a one-line note when both --index-only and --skills are set, so users see why a pipeline re-index ran with no skill files written. - index.ts --skills help text now flags the --index-only override. - shouldGenerateCommunitySkillFiles JSDoc documents the dual role of the gate (community skills + AGENTS.md/CLAUDE.md re-generation). - skip-git-cli.test.ts pins the override-warning surface end-to-end. --------- Co-authored-by: Gergő Magyar <gergomagyar@icloud.com> Co-authored-by: Cursor <cursoragent@cursor.com> |
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azizur100389
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e262dda35b
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fix(cli): only match <!-- gitnexus:* --> markers at section position (#1041) (#1042)
`upsertGitNexusSection` in ai-context.ts uses `indexOf` to locate the
bounds of the GitNexus section in CLAUDE.md / AGENTS.md before
replacement. `indexOf` matches the first occurrence of the marker
anywhere in the file, including inline prose references in backtick-
quoted fragments mid-sentence.
The shipped CLAUDE.md contains exactly such a reference ("See the
`<!-- gitnexus:start --> … <!-- gitnexus:end -->` block in AGENTS.md
for the canonical MCP tools..."). Running `gitnexus analyze` on a
fresh install matches those inline markers as section delimiters and
replaces the prose between them with the full ~100-line injected
block, breaking the backtick and corrupting markdown for every user.
Fix: new private `findSectionMarkerIndex` helper that only matches
markers occupying their own line — preceded by `\n` or start-of-file,
followed by `\n` / `\r` (CRLF files) / end-of-file. `\r` is explicit
so CRLF-terminated sections on Windows (core.autocrlf = true) still
match. The generator always emits markers alone on their line, so
every legitimate section continues to update in place; only inline
prose references now fall through to the append branch, which leaves
existing content untouched.
Two new unit tests:
- #1041 regression — seed CLAUDE.md with the shipped inline prose
line, run analyze twice, assert inline prose preserved verbatim
and marker counts stay at 2/2 (1 inline + 1 section-position)
- CRLF handling — seed a CRLF file with inline prose + legitimate
section, run analyze, assert section replaced in place, inline
prose preserved, stale stub content removed
No destructive ops, no bypass flags, no new deps. Behaviour change
is strictly narrowing — files that previously updated correctly
still do; files that previously got corrupted now fall through to
the safer append branch.
Closes #1041.
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azizur100389
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925460ab5b
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refactor(cli): trim duplicated ai-context CLAUDE.md block (#904) | ||
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Gabriel J Campbell
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b03413dcf9
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feat: added skip-agents-md cli flag (#517)
* feat: added skip-agents-md cli flag * fix: apply prettier formatting * feat: added skip-agents-md cli flag * fix: apply prettier formatting * feat: add skipAgentsMd option to skip AGENTS.md and CLAUDE.md updates * fixed bad merge |
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Gergő Magyar
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acf6fbdd39
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feat: configure eslint with unused import removal (#564)
* feat: configure eslint with unused import removal Add ESLint v9 (flat config) for code quality: - eslint-plugin-unused-imports for auto-removing dead imports - @typescript-eslint for TypeScript-aware linting - eslint-plugin-react-hooks for React hooks rules - eslint-config-prettier to avoid formatting conflicts - lint-staged runs eslint --fix before prettier on .ts/.tsx - CI lint job added to ci-quality.yml * refactor: remove unused imports via eslint --fix Auto-fixed by eslint-plugin-unused-imports. No logic changes. * chore: add eslint fix commit to .git-blame-ignore-revs |
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Gergő Magyar
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bf09eab95b
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feat: configure prettier with pre-commit hook (#563)
* feat: configure prettier with pre-commit hook integration Add prettier, lint-staged, and prettier-plugin-tailwindcss at the repo root with husky pre-commit hook integration. Moves husky from gitnexus/ to root package.json for reliable hook installation. - Root package.json with prepare/format/format:check scripts - .prettierrc with endOfLine:lf and tailwindStylesheet for TW v4 - .prettierignore excluding fixtures, vendor, generated, *.d.ts, *.md - .gitattributes enforcing LF line endings for Windows consistency - Pre-commit hook uses direct node_modules/.bin/ paths (no npx) * style: apply prettier formatting to entire codebase One-time bulk format. No logic changes. Use .git-blame-ignore-revs to skip this commit in git blame. * chore: add .git-blame-ignore-revs for prettier format commit * perf: pre-commit hook runs only tests related to staged files Use vitest --related to scope test execution to tests that import the changed files, instead of running the full suite on every commit. * perf: remove vitest from pre-commit hook, keep in CI only Pre-commit now runs lint-staged + tsc only. Tests run in CI (ci-tests.yml) where they belong — keeps commits fast. * ci: add prettier format check to quality workflow PRs will now fail if code isn't formatted with prettier. |
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abhigyanpatwari
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8a100a76d3 |
test: add test suite with vitest (unit + integration + fixtures)
- 59 test files covering unit and integration tests - vitest config with coverage thresholds and fork pooling - Test fixtures (mini-repo + multi-language sample code) - Add vitest + coverage-v8 to devDependencies - Add test scripts (test, test:integration, test:all, test:watch, test:coverage) - Move typescript to devDependencies where it belongs Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> |