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docs(r): mention CFG and rename in the README R paragraphs

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Both R paragraphs now say that --pdg builds a control-flow graph for R and that
rename is conservative. The shared Control flow paragraph no longer implies
reaching definitions for R, which has control flow only.
This commit is contained in:
Mick Cooney 2026-10-15 20:44:56 +01:00
parent 3c63a43c21
commit bb3e2279cd
2 changed files with 3 additions and 3 deletions
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@ -727,9 +727,9 @@ GitNexus builds a complete knowledge graph of your codebase through a multi-phas
**Imports** — cross-file import resolution · **Named Bindings** — `import { X as Y }` / re-export tracking · **Exports** — public/exported symbol detection · **Heritage** — class inheritance, interfaces, mixins · **Type Annotations** — explicit type extraction for receiver resolution · **Constructor Inference** — infer receiver type from constructor calls (`self`/`this` resolution included for all languages) · **Config** — language toolchain config parsing (tsconfig, go.mod, etc.) · **Frameworks** — AST-based framework pattern detection · **Entry Points** — entry point scoring heuristics
**R (experimental)** — `.r` / `.R` files, parsed with `@eagleoutice/tree-sitter-r`. Extracts functions, S4 classes, R6 classes and RefClass (`setRefClass`) classes with their methods and fields, and resolves `library()` / `require()` / `source()` imports to local packages and files, `obj$method()` and `pkg::fn()` calls, R6 `inherit=` / S4 `contains=` heritage and NAMESPACE-driven export status. Calls through function values, `do.call()`, infix operators and S3 dispatch are not linked, and `.Rmd` files, `box::use()` and external (CRAN) packages are not supported. See [docs/languages/r-provider.md](docs/languages/r-provider.md) for the full coverage and limits.
**R (experimental)** — `.r` / `.R` files, parsed with `@eagleoutice/tree-sitter-r`. Extracts functions, S4 classes, R6 classes and RefClass (`setRefClass`) classes with their methods and fields, and resolves `library()` / `require()` / `source()` imports to local packages and files, `obj$method()` and `pkg::fn()` calls, R6 `inherit=` / S4 `contains=` heritage and NAMESPACE-driven export status. Calls through function values, `do.call()`, infix operators and S3 dispatch are not linked, and `.Rmd` files, `box::use()` and external (CRAN) packages are not supported. With `--pdg` it also builds a control-flow graph (control dependence only; R has no reaching definitions), and `rename` handles plain functions while refusing classes, members, S3 methods, exported package functions and names spelled as strings. See [docs/languages/r-provider.md](docs/languages/r-provider.md) for the full coverage and limits.
**Control flow (CFG, opt-in `--pdg`)** — provider-owned control-flow graphs (`BasicBlock` nodes + `CFG` edges) feed control dependence and reaching definitions across the registered source languages. AST providers describe callable regions; COBOL uses source-backed program regions. Unsupported constructs and region limits produce explicit skips. Off by default.
**Control flow (CFG, opt-in `--pdg`)** — provider-owned control-flow graphs (`BasicBlock` nodes + `CFG` edges) feed control dependence and reaching definitions across the registered source languages (R has control flow only, no reaching definitions). AST providers describe callable regions; COBOL uses source-backed program regions. Unsupported constructs and region limits produce explicit skips. Off by default.
### Multi-Repo Architecture

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@ -486,7 +486,7 @@ TypeScript, JavaScript, Python, Java, C, C++, C#, Go, Rust, PHP, Kotlin, Swift,
**Imports** — cross-file import resolution · **Named Bindings** — `import { X as Y }` / re-export tracking · **Exports** — public/exported symbol detection · **Heritage** — class inheritance, interfaces, mixins · **Type Annotations** — explicit type extraction for receiver resolution · **Constructor Inference** — infer receiver type from constructor calls (`self`/`this` resolution included for all languages) · **Config** — language toolchain config parsing (tsconfig, go.mod, etc.) · **Frameworks** — AST-based framework pattern detection · **Entry Points** — entry point scoring heuristics
**R (experimental)** — `.r` / `.R` files, parsed with `@eagleoutice/tree-sitter-r`. Extracts functions, S4 classes, R6 classes and RefClass (`setRefClass`) classes with their methods and fields, and resolves `library()` / `require()` / `source()` imports to local packages and files, `obj$method()` and `pkg::fn()` calls, R6 `inherit=` / S4 `contains=` heritage and NAMESPACE-driven export status. Calls through function values, `do.call()`, infix operators and S3 dispatch are not linked, and `.Rmd` files, `box::use()` and external (CRAN) packages are not supported. See [docs/languages/r-provider.md](../docs/languages/r-provider.md) for the full coverage and limits.
**R (experimental)** — `.r` / `.R` files, parsed with `@eagleoutice/tree-sitter-r`. Extracts functions, S4 classes, R6 classes and RefClass (`setRefClass`) classes with their methods and fields, and resolves `library()` / `require()` / `source()` imports to local packages and files, `obj$method()` and `pkg::fn()` calls, R6 `inherit=` / S4 `contains=` heritage and NAMESPACE-driven export status. Calls through function values, `do.call()`, infix operators and S3 dispatch are not linked, and `.Rmd` files, `box::use()` and external (CRAN) packages are not supported. With `--pdg` it also builds a control-flow graph (control dependence only; R has no reaching definitions), and `rename` handles plain functions while refusing classes, members, S3 methods, exported package functions and names spelled as strings. See [docs/languages/r-provider.md](../docs/languages/r-provider.md) for the full coverage and limits.
## Agent Skills