fix: consolidate icon imports, fix stale refs and package name collision (#2343)

* fix: consolidate icon imports, fix stale refs and package name collision

three components were importing directly from lucide-react instead of
going through the centralized @/lib/lucide-icons module like the rest
of the codebase. added the missing Keyboard and BarChart2 exports to
the icons module and updated the imports.

also:
- removed duplicate mermaid init comment in ProcessFlowModal
- replaced placeholder issue #XXX with a descriptive note in git.ts
- updated stale KuzuDB reference to LadybugDB in ARCHITECTURE.md
- renamed gitnexus-web package.json name from "gitnexus" to "gitnexus-web"
  to avoid collision with the CLI package

* fix: complete package rename in lockfile and cite #2054 in git.ts comment

Address tri-review findings: package-lock.json name fields (top-level and
packages[""]) now match the renamed gitnexus-web package, and the
getCanonicalRemote doc comment cites #2054 instead of dropping the issue
reference.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* chore(autofix): apply prettier + eslint fixes via /autofix command

---------

Co-authored-by: Gergő Magyar <gergomagyar@icloud.com>
Co-authored-by: Claude Fable 5 <noreply@anthropic.com>
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>

ARCHITECTURE.md

@@ -17,7 +17,7 @@ Monorepo: **CLI/MCP** (`gitnexus/`) + **browser UI** (`gitnexus-web/`).
 
 1. **Ingestion** — `analyze.ts` → `runFullAnalysis` (`run-analyze.ts`) → `runPipelineFromRepo` (`pipeline.ts`). DAG of 14 phases builds a `KnowledgeGraph` in memory, then loads into LadybugDB under `.gitnexus/`. Repo registered in `~/.gitnexus/registry.json` for MCP discovery.
 
-2. **Persistence** — `repo-manager.ts` (paths, registry, KuzuDB cleanup). `lbug-adapter.ts` (graph load, queries, embedding batches).
+2. **Persistence** — `repo-manager.ts` (paths, registry, LadybugDB cleanup). `lbug-adapter.ts` (graph load, queries, embedding batches).
 
 3. **Query layer** — three interfaces to the same backend:
    - **MCP (stdio):** `mcp.ts` → `LocalBackend` → tools (`tools.ts`) + resources (`resources.ts`)

gitnexus-web/package-lock.json

@@ -1,11 +1,11 @@
 {
-  "name": "gitnexus",
+  "name": "gitnexus-web",
   "version": "0.0.0",
   "lockfileVersion": 3,
   "requires": true,
   "packages": {
     "": {
-      "name": "gitnexus",
+      "name": "gitnexus-web",
       "version": "0.0.0",
       "dependencies": {
         "@langchain/anthropic": "^1.3.29",

gitnexus-web/package.json

@@ -1,5 +1,5 @@
 {
-  "name": "gitnexus",
+  "name": "gitnexus-web",
   "private": true,
   "version": "0.0.0",
   "engines": {

gitnexus-web/src/components/HelpPanel.tsx

@@ -1,5 +1,14 @@
 import React, { useState } from 'react';
-import { X, GitBranch, Search, Filter, Zap, Keyboard, BarChart2, HelpCircle } from 'lucide-react';
+import {
+  X,
+  GitBranch,
+  Search,
+  Filter,
+  Zap,
+  Keyboard,
+  BarChart2,
+  HelpCircle,
+} from '@/lib/lucide-icons';
 import { useTranslation } from 'react-i18next';
 
 interface HelpPanelProps {

gitnexus-web/src/components/ProcessFlowModal.tsx

@@ -6,7 +6,7 @@
 
 import { useEffect, useRef, useCallback, useState } from 'react';
 import { useTranslation } from 'react-i18next';
-import { Copy, Focus, ZoomIn, ZoomOut } from 'lucide-react';
+import { Copy, Focus, ZoomIn, ZoomOut } from '@/lib/lucide-icons';
 import mermaid from 'mermaid';
 import DOMPurify from 'dompurify';
 import { ProcessData, generateProcessMermaid } from '../lib/mermaid-generator';
@@ -18,7 +18,6 @@ interface ProcessFlowModalProps {
   isFullScreen?: boolean;
 }
 
-// Initialize mermaid with cyan/purple theme matching GitNexus
 // Initialize mermaid with cyan/purple theme matching GitNexus
 mermaid.initialize({
   startOnLoad: false,

gitnexus-web/src/components/ProcessesPanel.tsx

@@ -18,7 +18,7 @@ import {
   Sparkles,
   Lightbulb,
   Layers,
-} from 'lucide-react';
+} from '@/lib/lucide-icons';
 import { useAppState } from '../hooks/useAppState';
 import { ProcessFlowModal } from './ProcessFlowModal';
 import type { ProcessData, ProcessStep } from '../lib/mermaid-generator';

gitnexus-web/src/lib/lucide-icons.tsx

@@ -47,6 +47,7 @@ export {
   ArrowDown,
   ArrowRight,
   AtSign,
+  BarChart2,
   Brain,
   Box,
   Braces,
@@ -71,6 +72,7 @@ export {
   Heart,
   HelpCircle,
   Home,
+  Keyboard,
   Key,
   Layers,
   Lightbulb,

gitnexus/src/storage/git.ts

@@ -42,7 +42,7 @@ export const getCurrentCommit = (repoPath: string): string => {
  * Get a stable canonical identifier for the repo's `origin` remote, if any.
  *
  * Used to fingerprint two on-disk clones as the same logical repository
- * (issue #XXX — silent graph drift across sibling clones). `path` alone
+ * (prevents silent graph drift across sibling clones — see #2054). `path` alone
  * is unreliable: worktrees, "clean clone for indexing" hygiene, and
  * multi-agent workspaces routinely have the same repo at multiple
  * absolute paths. The remote URL is the only on-disk signal that