diff --git a/gitnexus/package-lock.json b/gitnexus/package-lock.json
index 135312bdc..c6acebca4 100644
--- a/gitnexus/package-lock.json
+++ b/gitnexus/package-lock.json
@@ -1,41 +1,44 @@
 {
   "name": "gitnexus",
-  "version": "1.4.8",
+  "version": "1.6.1",
   "lockfileVersion": 3,
   "requires": true,
   "packages": {
     "": {
       "name": "gitnexus",
-      "version": "1.4.8",
+      "version": "1.6.1",
+      "hasInstallScript": true,
       "license": "PolyForm-Noncommercial-1.0.0",
       "dependencies": {
-        "@huggingface/transformers": "^3.0.0",
+        "@huggingface/transformers": "^4.1.0",
         "@ladybugdb/core": "^0.15.2",
         "@modelcontextprotocol/sdk": "^1.0.0",
+        "@scarf/scarf": "^1.4.0",
         "cli-progress": "^3.12.0",
-        "commander": "^12.0.0",
+        "commander": "^14.0.3",
         "cors": "^2.8.5",
         "express": "^4.19.2",
-        "glob": "^11.0.0",
+        "glob": "^13.0.6",
         "graphology": "^0.25.4",
         "graphology-indices": "^0.17.0",
         "graphology-utils": "^2.3.0",
         "ignore": "^7.0.5",
+        "js-yaml": "^4.1.1",
         "lru-cache": "^11.0.0",
-        "mnemonist": "^0.39.0",
+        "mnemonist": "^0.40.3",
         "onnxruntime-node": "^1.24.0",
         "pandemonium": "^2.4.0",
-        "tree-sitter": "^0.25.0",
-        "tree-sitter-c": "^0.24.1",
-        "tree-sitter-c-sharp": "^0.23.1",
+        "tree-sitter": "^0.21.1",
+        "tree-sitter-c": "0.23.2",
+        "tree-sitter-c-sharp": "0.23.1",
         "tree-sitter-cpp": "^0.23.4",
-        "tree-sitter-go": "^0.25.0",
+        "tree-sitter-go": "^0.23.0",
         "tree-sitter-java": "^0.23.5",
-        "tree-sitter-javascript": "^0.25.0",
-        "tree-sitter-php": "^0.24.2",
-        "tree-sitter-python": "^0.25.0",
+        "tree-sitter-javascript": "^0.23.0",
+        "tree-sitter-php": "^0.23.0",
+        "tree-sitter-python": "0.23.4",
         "tree-sitter-ruby": "^0.23.1",
-        "tree-sitter-rust": "^0.24.0",
+        "tree-sitter-rust": "0.23.1",
         "tree-sitter-typescript": "^0.23.2",
         "uuid": "^13.0.0"
       },
@@ -46,10 +49,11 @@
         "@types/cli-progress": "^3.11.6",
         "@types/cors": "^2.8.17",
         "@types/express": "^4.17.21",
+        "@types/js-yaml": "^4.0.9",
         "@types/node": "^20.0.0",
         "@types/uuid": "^10.0.0",
         "@vitest/coverage-v8": "^4.0.18",
-        "husky": "^9.1.7",
+        "gitnexus-shared": "file:../gitnexus-shared",
         "tsx": "^4.0.0",
         "typescript": "^5.4.5",
         "vitest": "^4.0.18"
@@ -58,9 +62,19 @@
         "node": ">=20.0.0"
       },
       "optionalDependencies": {
-        "tree-sitter-dart": "github:UserNobody14/tree-sitter-dart#0fc19c3a57b1109802af41d2b8f60d8835c5da3a",
+        "node-addon-api": "^8.0.0",
+        "node-gyp-build": "^4.8.0",
+        "tree-sitter-dart": "git+https://github.com/UserNobody14/tree-sitter-dart.git#80e23c07b64494f7e21090bb3450223ef0b192f4",
         "tree-sitter-kotlin": "^0.3.8",
-        "tree-sitter-swift": "0.7.1"
+        "tree-sitter-proto": "file:./vendor/tree-sitter-proto",
+        "tree-sitter-swift": "^0.6.0"
+      }
+    },
+    "../gitnexus-shared": {
+      "version": "1.0.0",
+      "dev": true,
+      "devDependencies": {
+        "typescript": "^6.0.2"
       }
     },
     "node_modules/@babel/helper-string-parser": {
@@ -619,16 +633,23 @@
         "node": ">=18"
       }
     },
+    "node_modules/@huggingface/tokenizers": {
+      "version": "0.1.3",
+      "resolved": "https://registry.npmjs.org/@huggingface/tokenizers/-/tokenizers-0.1.3.tgz",
+      "integrity": "sha512-8rF/RRT10u+kn7YuUbUg0OF30K8rjTc78aHpxT+qJ1uWSqxT1MHi8+9ltwYfkFYJzT/oS+qw3JVfHtNMGAdqyA==",
+      "license": "Apache-2.0"
+    },
     "node_modules/@huggingface/transformers": {
-      "version": "3.8.1",
-      "resolved": "https://registry.npmjs.org/@huggingface/transformers/-/transformers-3.8.1.tgz",
-      "integrity": "sha512-tsTk4zVjImqdqjS8/AOZg2yNLd1z9S5v+7oUPpXaasDRwEDhB+xnglK1k5cad26lL5/ZIaeREgWWy0bs9y9pPA==",
+      "version": "4.1.0",
+      "resolved": "https://registry.npmjs.org/@huggingface/transformers/-/transformers-4.1.0.tgz",
+      "integrity": "sha512-WiMf9eyvF6V2pj4gs12A7GQV3svyFIBtB/W+Hn5lT5E5DyqWUno1ZrWoAfJv69X1RNv/0GoOo6DFmL6NOYd+rg==",
       "license": "Apache-2.0",
       "dependencies": {
-        "@huggingface/jinja": "^0.5.3",
-        "onnxruntime-node": "1.21.0",
-        "onnxruntime-web": "1.22.0-dev.20250409-89f8206ba4",
-        "sharp": "^0.34.1"
+        "@huggingface/jinja": "^0.5.6",
+        "@huggingface/tokenizers": "^0.1.3",
+        "onnxruntime-node": "1.24.3",
+        "onnxruntime-web": "1.26.0-dev.20260410-5e55544225",
+        "sharp": "^0.34.5"
       }
     },
     "node_modules/@img/colour": {
@@ -1096,15 +1117,6 @@
         "url": "https://opencollective.com/libvips"
       }
     },
-    "node_modules/@isaacs/cliui": {
-      "version": "9.0.0",
-      "resolved": "https://registry.npmjs.org/@isaacs/cliui/-/cliui-9.0.0.tgz",
-      "integrity": "sha512-AokJm4tuBHillT+FpMtxQ60n8ObyXBatq7jD2/JA9dxbDDokKQm8KMht5ibGzLVU9IJDIKK4TPKgMHEYMn3lMg==",
-      "license": "BlueOak-1.0.0",
-      "engines": {
-        "node": ">=18"
-      }
-    },
     "node_modules/@isaacs/fs-minipass": {
       "version": "4.0.1",
       "resolved": "https://registry.npmjs.org/@isaacs/fs-minipass/-/fs-minipass-4.0.1.tgz",
@@ -1214,6 +1226,12 @@
         "win32"
       ]
     },
+    "node_modules/@ladybugdb/core/node_modules/node-addon-api": {
+      "version": "6.1.0",
+      "resolved": "https://registry.npmjs.org/node-addon-api/-/node-addon-api-6.1.0.tgz",
+      "integrity": "sha512-+eawOlIgy680F0kBzPUNFhMZGtJ1YmqM6l4+Crf4IkImjYrO/mqPwRMh352g23uIaQKFItcQ64I7KMaJxHgAVA==",
+      "license": "MIT"
+    },
     "node_modules/@modelcontextprotocol/sdk": {
       "version": "1.28.0",
       "resolved": "https://registry.npmjs.org/@modelcontextprotocol/sdk/-/sdk-1.28.0.tgz",
@@ -1869,6 +1887,13 @@
       "dev": true,
       "license": "MIT"
     },
+    "node_modules/@scarf/scarf": {
+      "version": "1.4.0",
+      "resolved": "https://registry.npmjs.org/@scarf/scarf/-/scarf-1.4.0.tgz",
+      "integrity": "sha512-xxeapPiUXdZAE3che6f3xogoJPeZgig6omHEy1rIY5WVsB3H2BHNnZH+gHG6x91SCWyQCzWGsuL2Hh3ClO5/qQ==",
+      "hasInstallScript": true,
+      "license": "Apache-2.0"
+    },
     "node_modules/@standard-schema/spec": {
       "version": "1.1.0",
       "resolved": "https://registry.npmjs.org/@standard-schema/spec/-/spec-1.1.0.tgz",
@@ -1986,6 +2011,13 @@
       "dev": true,
       "license": "MIT"
     },
+    "node_modules/@types/js-yaml": {
+      "version": "4.0.9",
+      "resolved": "https://registry.npmjs.org/@types/js-yaml/-/js-yaml-4.0.9.tgz",
+      "integrity": "sha512-k4MGaQl5TGo/iipqb2UDG2UwjXziSWkh0uysQelTlJpX1qGlpUZYm8PnO4DxG1qBomtJUdYJ6qR6xdIah10JLg==",
+      "dev": true,
+      "license": "MIT"
+    },
     "node_modules/@types/mime": {
       "version": "1.3.5",
       "resolved": "https://registry.npmjs.org/@types/mime/-/mime-1.3.5.tgz",
@@ -2279,6 +2311,12 @@
         "url": "https://github.com/chalk/ansi-styles?sponsor=1"
       }
     },
+    "node_modules/argparse": {
+      "version": "2.0.1",
+      "resolved": "https://registry.npmjs.org/argparse/-/argparse-2.0.1.tgz",
+      "integrity": "sha512-8+9WqebbFzpX9OR+Wa6O29asIogeRMzcGtAINdpMHHyAg10f05aSFVBbcEqGf/PXw1EjAZ+q2/bEBg3DvurK3Q==",
+      "license": "Python-2.0"
+    },
     "node_modules/array-flatten": {
       "version": "1.1.1",
       "resolved": "https://registry.npmjs.org/array-flatten/-/array-flatten-1.1.1.tgz",
@@ -2514,12 +2552,12 @@
       "license": "MIT"
     },
     "node_modules/commander": {
-      "version": "12.1.0",
-      "resolved": "https://registry.npmjs.org/commander/-/commander-12.1.0.tgz",
-      "integrity": "sha512-Vw8qHK3bZM9y/P10u3Vib8o/DdkvA2OtPtZvD871QKjy74Wj1WSKFILMPRPSdUSx5RFK1arlJzEtA4PkFgnbuA==",
+      "version": "14.0.3",
+      "resolved": "https://registry.npmjs.org/commander/-/commander-14.0.3.tgz",
+      "integrity": "sha512-H+y0Jo/T1RZ9qPP4Eh1pkcQcLRglraJaSLoyOtHxu6AapkjWVCy2Sit1QQ4x3Dng8qDlSsZEet7g5Pq06MvTgw==",
       "license": "MIT",
       "engines": {
-        "node": ">=18"
+        "node": ">=20"
       }
     },
     "node_modules/content-disposition": {
@@ -2922,6 +2960,7 @@
       "resolved": "https://registry.npmjs.org/express/-/express-4.22.1.tgz",
       "integrity": "sha512-F2X8g9P1X7uCPZMA3MVf9wcTqlyNp7IhH5qPCI0izhaOIYXaW9L535tGA3qmjRzpH+bZczqq7hVKxTR4NWnu+g==",
       "license": "MIT",
+      "peer": true,
       "dependencies": {
         "accepts": "~1.3.8",
         "array-flatten": "1.1.1",
@@ -3075,22 +3114,6 @@
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       "license": "Apache-2.0"
     },
-    "node_modules/foreground-child": {
-      "version": "3.3.1",
-      "resolved": "https://registry.npmjs.org/foreground-child/-/foreground-child-3.3.1.tgz",
-      "integrity": "sha512-gIXjKqtFuWEgzFRJA9WCQeSJLZDjgJUOMCMzxtvFq/37KojM1BFGufqsCy0r4qSQmYLsZYMeyRqzIWOMup03sw==",
-      "license": "ISC",
-      "dependencies": {
-        "cross-spawn": "^7.0.6",
-        "signal-exit": "^4.0.1"
-      },
-      "engines": {
-        "node": ">=14"
-      },
-      "funding": {
-        "url": "https://github.com/sponsors/isaacs"
-      }
-    },
     "node_modules/forwarded": {
       "version": "0.2.0",
       "resolved": "https://registry.npmjs.org/forwarded/-/forwarded-0.2.0.tgz",
@@ -3206,25 +3229,22 @@
         "url": "https://github.com/privatenumber/get-tsconfig?sponsor=1"
       }
     },
+    "node_modules/gitnexus-shared": {
+      "resolved": "../gitnexus-shared",
+      "link": true
+    },
     "node_modules/glob": {
-      "version": "11.1.0",
-      "resolved": "https://registry.npmjs.org/glob/-/glob-11.1.0.tgz",
-      "integrity": "sha512-vuNwKSaKiqm7g0THUBu2x7ckSs3XJLXE+2ssL7/MfTGPLLcrJQ/4Uq1CjPTtO5cCIiRxqvN6Twy1qOwhL0Xjcw==",
-      "deprecated": "Old versions of glob are not supported, and contain widely publicized security vulnerabilities, which have been fixed in the current version. Please update. Support for old versions may be purchased (at exorbitant rates) by contacting i@izs.me",
+      "version": "13.0.6",
+      "resolved": "https://registry.npmjs.org/glob/-/glob-13.0.6.tgz",
+      "integrity": "sha512-Wjlyrolmm8uDpm/ogGyXZXb1Z+Ca2B8NbJwqBVg0axK9GbBeoS7yGV6vjXnYdGm6X53iehEuxxbyiKp8QmN4Vw==",
       "license": "BlueOak-1.0.0",
       "dependencies": {
-        "foreground-child": "^3.3.1",
-        "jackspeak": "^4.1.1",
-        "minimatch": "^10.1.1",
-        "minipass": "^7.1.2",
-        "package-json-from-dist": "^1.0.0",
-        "path-scurry": "^2.0.0"
-      },
-      "bin": {
-        "glob": "dist/esm/bin.mjs"
+        "minimatch": "^10.2.2",
+        "minipass": "^7.1.3",
+        "path-scurry": "^2.0.2"
       },
       "engines": {
-        "node": "20 || >=22"
+        "node": "18 || 20 || >=22"
       },
       "funding": {
         "url": "https://github.com/sponsors/isaacs"
@@ -3307,6 +3327,15 @@
         "graphology-types": ">=0.20.0"
       }
     },
+    "node_modules/graphology-indices/node_modules/mnemonist": {
+      "version": "0.39.8",
+      "resolved": "https://registry.npmjs.org/mnemonist/-/mnemonist-0.39.8.tgz",
+      "integrity": "sha512-vyWo2K3fjrUw8YeeZ1zF0fy6Mu59RHokURlld8ymdUPjMlD9EC9ov1/YPqTgqRvUN9nTr3Gqfz29LYAmu0PHPQ==",
+      "license": "MIT",
+      "dependencies": {
+        "obliterator": "^2.0.1"
+      }
+    },
     "node_modules/graphology-types": {
       "version": "0.24.8",
       "resolved": "https://registry.npmjs.org/graphology-types/-/graphology-types-0.24.8.tgz",
@@ -3380,6 +3409,7 @@
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       "license": "MIT",
+      "peer": true,
       "engines": {
         "node": ">=16.9.0"
       }
@@ -3411,22 +3441,6 @@
         "url": "https://opencollective.com/express"
       }
     },
-    "node_modules/husky": {
-      "version": "9.1.7",
-      "resolved": "https://registry.npmjs.org/husky/-/husky-9.1.7.tgz",
-      "integrity": "sha512-5gs5ytaNjBrh5Ow3zrvdUUY+0VxIuWVL4i9irt6friV+BqdCfmV11CQTWMiBYWHbXhco+J1kHfTOUkePhCDvMA==",
-      "dev": true,
-      "license": "MIT",
-      "bin": {
-        "husky": "bin.js"
-      },
-      "engines": {
-        "node": ">=18"
-      },
-      "funding": {
-        "url": "https://github.com/sponsors/typicode"
-      }
-    },
     "node_modules/iconv-lite": {
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       "resolved": "https://registry.npmjs.org/iconv-lite/-/iconv-lite-0.4.24.tgz",
@@ -3541,21 +3555,6 @@
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-    "node_modules/jackspeak": {
-      "version": "4.2.3",
-      "resolved": "https://registry.npmjs.org/jackspeak/-/jackspeak-4.2.3.tgz",
-      "integrity": "sha512-ykkVRwrYvFm1nb2AJfKKYPr0emF6IiXDYUaFx4Zn9ZuIH7MrzEZ3sD5RlqGXNRpHtvUHJyOnCEFxOlNDtGo7wg==",
-      "license": "BlueOak-1.0.0",
-      "dependencies": {
-        "@isaacs/cliui": "^9.0.0"
-      },
-      "engines": {
-        "node": "20 || >=22"
-      },
-      "funding": {
-        "url": "https://github.com/sponsors/isaacs"
-      }
-    },
     "node_modules/jose": {
       "version": "6.2.2",
       "resolved": "https://registry.npmjs.org/jose/-/jose-6.2.2.tgz",
@@ -3572,6 +3571,18 @@
       "dev": true,
       "license": "MIT"
     },
+    "node_modules/js-yaml": {
+      "version": "4.1.1",
+      "resolved": "https://registry.npmjs.org/js-yaml/-/js-yaml-4.1.1.tgz",
+      "integrity": "sha512-qQKT4zQxXl8lLwBtHMWwaTcGfFOZviOJet3Oy/xmGk2gZH677CJM9EvtfdSkgWcATZhj/55JZ0rmy3myCT5lsA==",
+      "license": "MIT",
+      "dependencies": {
+        "argparse": "^2.0.1"
+      },
+      "bin": {
+        "js-yaml": "bin/js-yaml.js"
+      }
+    },
     "node_modules/json-schema-traverse": {
       "version": "1.0.0",
       "resolved": "https://registry.npmjs.org/json-schema-traverse/-/json-schema-traverse-1.0.0.tgz",
@@ -4043,12 +4054,12 @@
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-      "resolved": "https://registry.npmjs.org/mnemonist/-/mnemonist-0.39.8.tgz",
-      "integrity": "sha512-vyWo2K3fjrUw8YeeZ1zF0fy6Mu59RHokURlld8ymdUPjMlD9EC9ov1/YPqTgqRvUN9nTr3Gqfz29LYAmu0PHPQ==",
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+      "resolved": "https://registry.npmjs.org/mnemonist/-/mnemonist-0.40.3.tgz",
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       "license": "MIT",
       "dependencies": {
-        "obliterator": "^2.0.1"
+        "obliterator": "^2.0.4"
       }
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     "node_modules/ms": {
@@ -4086,10 +4097,13 @@
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-      "license": "MIT"
+      "version": "8.7.0",
+      "resolved": "https://registry.npmjs.org/node-addon-api/-/node-addon-api-8.7.0.tgz",
+      "integrity": "sha512-9MdFxmkKaOYVTV+XVRG8ArDwwQ77XIgIPyKASB1k3JPq3M8fGQQQE3YpMOrKm6g//Ktx8ivZr8xo1Qmtqub+GA==",
+      "license": "MIT",
+      "engines": {
+        "node": "^18 || ^20 || >= 21"
+      }
     },
     "node_modules/node-api-headers": {
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@@ -4200,31 +4214,25 @@
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     "node_modules/onnxruntime-web": {
-      "version": "1.22.0-dev.20250409-89f8206ba4",
-      "resolved": "https://registry.npmjs.org/onnxruntime-web/-/onnxruntime-web-1.22.0-dev.20250409-89f8206ba4.tgz",
-      "integrity": "sha512-0uS76OPgH0hWCPrFKlL8kYVV7ckM7t/36HfbgoFw6Nd0CZVVbQC4PkrR8mBX8LtNUFZO25IQBqV2Hx2ho3FlbQ==",
+      "version": "1.26.0-dev.20260410-5e55544225",
+      "resolved": "https://registry.npmjs.org/onnxruntime-web/-/onnxruntime-web-1.26.0-dev.20260410-5e55544225.tgz",
+      "integrity": "sha512-hHd9n8DzIfGSAjM4Dvslesc8i6h9HEEcl8qt7X3LfhUxMgls6FBJ32j2xrDtJjKJFEehFeJmyB/pvad1I8KS8w==",
       "license": "MIT",
       "dependencies": {
         "flatbuffers": "^25.1.24",
         "guid-typescript": "^1.0.9",
         "long": "^5.2.3",
-        "onnxruntime-common": "1.22.0-dev.20250409-89f8206ba4",
+        "onnxruntime-common": "1.24.0-dev.20251116-b39e144322",
         "platform": "^1.3.6",
         "protobufjs": "^7.2.4"
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     },
     "node_modules/onnxruntime-web/node_modules/onnxruntime-common": {
-      "version": "1.22.0-dev.20250409-89f8206ba4",
-      "resolved": "https://registry.npmjs.org/onnxruntime-common/-/onnxruntime-common-1.22.0-dev.20250409-89f8206ba4.tgz",
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-      "license": "MIT",
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-        "node-gyp-build": "^4.8.2"
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-      "peerDependencies": {
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-      "peerDependenciesMeta": {
-        "tree-sitter": {
-          "optional": true
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-      }
-    },
-    "node_modules/tree-sitter/node_modules/node-addon-api": {
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-      "resolved": "https://registry.npmjs.org/node-addon-api/-/node-addon-api-8.6.0.tgz",
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       "dev": true,
       "license": "MIT",
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@@ -5612,6 +5487,7 @@
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       "dev": true,
       "license": "MIT",
+      "peer": true,
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@@ -5690,6 +5566,7 @@
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       "dev": true,
       "license": "MIT",
+      "peer": true,
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@@ -5871,6 +5748,7 @@
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       "license": "MIT",
+      "peer": true,
       "funding": {
         "url": "https://github.com/sponsors/colinhacks"
       }
@@ -5883,6 +5761,15 @@
       "peerDependencies": {
         "zod": "^3.25 || ^4"
       }
+    },
+    "vendor/tree-sitter-proto": {
+      "version": "0.4.1",
+      "hasInstallScript": true,
+      "license": "MIT",
+      "optional": true,
+      "peerDependencies": {
+        "tree-sitter": ">=0.21.0"
+      }
     }
   }
 }