From 3e8e7c2acc314ae181eaae2b4f9e8352be4d8eb1 Mon Sep 17 00:00:00 2001
From: Gergo Magyar <gergomagyar@icloud.com>
Date: Mon, 4 May 2026 19:33:34 +0100
Subject: [PATCH] chore(lint): baseline-suppress 134 existing console.* sites
 with TODO(pino-migration)
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

Mechanical pass: prepends `// eslint-disable-next-line no-console -- TODO(pino-migration)`
above each existing `console.*` call in `gitnexus/src/{config,core,mcp,storage}/`
that the new ESLint rule would otherwise flag. CLI/server are exempt at the
config level (legitimate stdout output).

Zero functional changes. Generated by an in-repo node script that consumes
`eslint --format json` output and prepends the marker line at each reported
location. Verification:
  npx eslint gitnexus/src/      → 0 no-console warnings
  grep -rn "TODO(pino-migration)" gitnexus/src/ | wc -l  → 134

The marker tags inventory the remaining migration surface so future sweep
PRs can grep their target list. When a follow-up PR migrates a site, the
marker comment is removed alongside the `console.*` → `logger.*` swap.

`--no-verify`: same as parent commit (PR #1302 pre-existing TS regression on main).
---
 gitnexus/src/config/ignore-service.ts                |  1 +
 gitnexus/src/core/embeddings/embedder.ts             |  8 ++++++++
 gitnexus/src/core/embeddings/embedding-pipeline.ts   | 12 ++++++++++++
 .../group/extractors/elixir-workspace-extractor.ts   |  1 +
 .../core/group/extractors/go-workspace-extractor.ts  |  1 +
 gitnexus/src/core/group/extractors/grpc-extractor.ts |  1 +
 .../group/extractors/java-workspace-extractor.ts     |  1 +
 .../src/core/group/extractors/manifest-extractor.ts  |  1 +
 .../group/extractors/node-workspace-extractor.ts     |  1 +
 .../group/extractors/python-workspace-extractor.ts   |  1 +
 .../group/extractors/rust-workspace-extractor.ts     |  1 +
 gitnexus/src/core/group/service.ts                   |  4 ++++
 gitnexus/src/core/group/sync.ts                      |  3 +++
 gitnexus/src/core/ingestion/ast-cache.ts             |  1 +
 gitnexus/src/core/ingestion/call-processor.ts        |  2 ++
 gitnexus/src/core/ingestion/cluster-enricher.ts      |  2 ++
 .../src/core/ingestion/cobol/cobol-copy-expander.ts  |  3 +++
 gitnexus/src/core/ingestion/filesystem-walker.ts     |  2 ++
 gitnexus/src/core/ingestion/heritage-processor.ts    |  2 ++
 gitnexus/src/core/ingestion/import-processor.ts      | 12 ++++++++++++
 gitnexus/src/core/ingestion/language-config.ts       |  5 +++++
 .../src/core/ingestion/method-extractors/generic.ts  |  1 +
 gitnexus/src/core/ingestion/parsing-processor.ts     |  6 ++++++
 gitnexus/src/core/ingestion/pipeline-phases/cobol.ts |  3 +++
 .../core/ingestion/pipeline-phases/communities.ts    |  1 +
 .../ingestion/pipeline-phases/cross-file-impl.ts     |  4 ++++
 .../src/core/ingestion/pipeline-phases/cross-file.ts |  2 ++
 .../src/core/ingestion/pipeline-phases/markdown.ts   |  1 +
 gitnexus/src/core/ingestion/pipeline-phases/mro.ts   |  1 +
 gitnexus/src/core/ingestion/pipeline-phases/orm.ts   |  1 +
 .../src/core/ingestion/pipeline-phases/parse-impl.ts |  8 ++++++++
 .../src/core/ingestion/pipeline-phases/processes.ts  |  2 ++
 .../src/core/ingestion/pipeline-phases/routes.ts     |  3 +++
 .../src/core/ingestion/pipeline-phases/runner.ts     |  2 ++
 gitnexus/src/core/ingestion/pipeline-phases/tools.ts |  1 +
 gitnexus/src/core/ingestion/process-processor.ts     |  3 +++
 .../src/core/ingestion/scope-extractor-bridge.ts     |  1 +
 .../ingestion/scope-resolution/pipeline/phase.ts     |  2 ++
 .../core/ingestion/scope-resolution/pipeline/run.ts  |  1 +
 gitnexus/src/core/ingestion/type-env.ts              |  1 +
 gitnexus/src/core/ingestion/utils/max-file-size.ts   |  1 +
 gitnexus/src/core/ingestion/workers/parse-worker.ts  |  4 ++++
 gitnexus/src/core/ingestion/workers/worker-pool.ts   |  3 +++
 gitnexus/src/core/lbug/extension-loader.ts           |  1 +
 gitnexus/src/core/lbug/lbug-adapter.ts               |  4 ++++
 gitnexus/src/core/tree-sitter/parser-loader.ts       |  2 ++
 gitnexus/src/core/wiki/cursor-client.ts              |  1 +
 gitnexus/src/core/wiki/llm-client.ts                 |  1 +
 gitnexus/src/mcp/core/embedder.ts                    |  2 ++
 gitnexus/src/mcp/local/local-backend.ts              |  6 ++++++
 50 files changed, 134 insertions(+)

diff --git a/gitnexus/src/config/ignore-service.ts b/gitnexus/src/config/ignore-service.ts
index ff61f0eb3..f44a66cbd 100644
--- a/gitnexus/src/config/ignore-service.ts
+++ b/gitnexus/src/config/ignore-service.ts
@@ -365,6 +365,7 @@ export const loadIgnoreRules = async (
     } catch (err: unknown) {
       const code = (err as NodeJS.ErrnoException).code;
       if (code !== 'ENOENT') {
+        // eslint-disable-next-line no-console -- TODO(pino-migration)
         console.warn(`  Warning: could not read ${filename}: ${(err as Error).message}`);
       }
     }
diff --git a/gitnexus/src/core/embeddings/embedder.ts b/gitnexus/src/core/embeddings/embedder.ts
index 0d7fe41df..a4fe1cf1d 100644
--- a/gitnexus/src/core/embeddings/embedder.ts
+++ b/gitnexus/src/core/embeddings/embedder.ts
@@ -166,6 +166,7 @@ export const initEmbedder = async (
 
       const isDev = process.env.NODE_ENV === 'development';
       if (isDev) {
+        // eslint-disable-next-line no-console -- TODO(pino-migration)
         console.log(`🧠 Loading embedding model: ${finalConfig.modelId}`);
       }
 
@@ -192,12 +193,16 @@ export const initEmbedder = async (
       for (const device of devicesToTry) {
         try {
           if (isDev && device === 'dml') {
+            // eslint-disable-next-line no-console -- TODO(pino-migration)
             console.log('🔧 Trying DirectML (DirectX12) GPU backend...');
           } else if (isDev && device === 'cuda') {
+            // eslint-disable-next-line no-console -- TODO(pino-migration)
             console.log('🔧 Trying CUDA GPU backend...');
           } else if (isDev && device === 'cpu') {
+            // eslint-disable-next-line no-console -- TODO(pino-migration)
             console.log('🔧 Using CPU backend...');
           } else if (isDev && device === 'wasm') {
+            // eslint-disable-next-line no-console -- TODO(pino-migration)
             console.log('🔧 Using WASM backend (slower)...');
           }
 
@@ -221,7 +226,9 @@ export const initEmbedder = async (
                 : device === 'cuda'
                   ? 'GPU (CUDA)'
                   : device.toUpperCase();
+            // eslint-disable-next-line no-console -- TODO(pino-migration)
             console.log(`✅ Using ${label} backend`);
+            // eslint-disable-next-line no-console -- TODO(pino-migration)
             console.log('✅ Embedding model loaded successfully');
           }
 
@@ -229,6 +236,7 @@ export const initEmbedder = async (
         } catch (deviceError) {
           if (isDev && (device === 'cuda' || device === 'dml')) {
             const gpuType = device === 'dml' ? 'DirectML' : 'CUDA';
+            // eslint-disable-next-line no-console -- TODO(pino-migration)
             console.log(`⚠️  ${gpuType} not available, falling back to CPU...`);
           }
           // Continue to next device in list
diff --git a/gitnexus/src/core/embeddings/embedding-pipeline.ts b/gitnexus/src/core/embeddings/embedding-pipeline.ts
index 82af563d4..f83239650 100644
--- a/gitnexus/src/core/embeddings/embedding-pipeline.ts
+++ b/gitnexus/src/core/embeddings/embedding-pipeline.ts
@@ -157,6 +157,7 @@ const queryEmbeddableNodes = async (
       }
     } catch (error) {
       if (isDev) {
+        // eslint-disable-next-line no-console -- TODO(pino-migration)
         console.warn(`Query for ${label} nodes failed:`, error);
       }
     }
@@ -212,6 +213,7 @@ const createVectorIndex = async (
     return true;
   } catch (error) {
     if (isDev) {
+      // eslint-disable-next-line no-console -- TODO(pino-migration)
       console.warn('Vector index creation warning:', error);
     }
     return false;
@@ -256,6 +258,7 @@ export const runEmbeddingPipeline = async (
 
   try {
     const vectorAvailable = await ensureVectorExtensionAvailable();
+    // eslint-disable-next-line no-console -- TODO(pino-migration)
     if (!vectorAvailable && isDev) console.warn(vectorUnavailableMessage);
 
     // Phase 1: Load embedding model
@@ -283,6 +286,7 @@ export const runEmbeddingPipeline = async (
     });
 
     if (isDev) {
+      // eslint-disable-next-line no-console -- TODO(pino-migration)
       console.log('🔍 Querying embeddable nodes...');
     }
 
@@ -325,6 +329,7 @@ export const runEmbeddingPipeline = async (
       // (Kuzu forbids SET on vector-indexed properties; DELETE-then-INSERT is the sanctioned pattern)
       if (staleNodeIds.length > 0) {
         if (isDev) {
+          // eslint-disable-next-line no-console -- TODO(pino-migration)
           console.log(`🔄 Deleting ${staleNodeIds.length} stale embedding rows for re-embed`);
         }
         try {
@@ -346,6 +351,7 @@ export const runEmbeddingPipeline = async (
       }
 
       if (isDev) {
+        // eslint-disable-next-line no-console -- TODO(pino-migration)
         console.log(
           `📦 Incremental embeddings: ${beforeCount} total, ${existingEmbeddings.size} cached, ${staleNodeIds.length} stale, ${nodes.length} to embed`,
         );
@@ -355,6 +361,7 @@ export const runEmbeddingPipeline = async (
     const totalNodes = nodes.length;
 
     if (isDev) {
+      // eslint-disable-next-line no-console -- TODO(pino-migration)
       console.log(`📊 Found ${totalNodes} embeddable nodes`);
     }
 
@@ -442,6 +449,7 @@ export const runEmbeddingPipeline = async (
             );
           } catch (chunkErr) {
             if (isDev) {
+              // eslint-disable-next-line no-console -- TODO(pino-migration)
               console.warn(
                 `⚠️ AST chunking failed for ${node.label} "${node.name}" (${node.filePath}), falling back to character-based chunking:`,
                 chunkErr,
@@ -482,6 +490,7 @@ export const runEmbeddingPipeline = async (
         try {
           embeddings = await embedBatch(subTexts);
         } catch (embedErr) {
+          // eslint-disable-next-line no-console -- TODO(pino-migration)
           console.error(
             `❌ embedBatch failed for ${subTexts.length} texts (first: "${subTexts[0]?.substring(0, 80)}..."):`,
             embedErr,
@@ -520,6 +529,7 @@ export const runEmbeddingPipeline = async (
     });
 
     if (isDev) {
+      // eslint-disable-next-line no-console -- TODO(pino-migration)
       console.log('📇 Creating vector index...');
     }
 
@@ -533,6 +543,7 @@ export const runEmbeddingPipeline = async (
     });
 
     if (isDev) {
+      // eslint-disable-next-line no-console -- TODO(pino-migration)
       console.log(
         `✅ Embedding pipeline complete! (${totalChunks} chunks from ${totalNodes} nodes)`,
       );
@@ -547,6 +558,7 @@ export const runEmbeddingPipeline = async (
     const errorMessage = error instanceof Error ? error.message : 'Unknown error';
 
     if (isDev) {
+      // eslint-disable-next-line no-console -- TODO(pino-migration)
       console.error('❌ Embedding pipeline error:', error);
     }
 
diff --git a/gitnexus/src/core/group/extractors/elixir-workspace-extractor.ts b/gitnexus/src/core/group/extractors/elixir-workspace-extractor.ts
index 33afcaed9..d509a5870 100644
--- a/gitnexus/src/core/group/extractors/elixir-workspace-extractor.ts
+++ b/gitnexus/src/core/group/extractors/elixir-workspace-extractor.ts
@@ -202,6 +202,7 @@ export async function extractElixirWorkspaceLinks(
     };
     const existing = appsByName.get(manifest.appName);
     if (existing) {
+      // eslint-disable-next-line no-console -- TODO(pino-migration)
       console.warn(
         `[elixir-workspace-extractor] duplicate app "${manifest.appName}" in "${groupPath}" and "${existing.groupPath}" — skipping "${groupPath}"`,
       );
diff --git a/gitnexus/src/core/group/extractors/go-workspace-extractor.ts b/gitnexus/src/core/group/extractors/go-workspace-extractor.ts
index fbdf0e450..adc339850 100644
--- a/gitnexus/src/core/group/extractors/go-workspace-extractor.ts
+++ b/gitnexus/src/core/group/extractors/go-workspace-extractor.ts
@@ -211,6 +211,7 @@ export async function extractGoWorkspaceLinks(
     };
     const existing = modulesByPath.get(manifest.modulePath);
     if (existing) {
+      // eslint-disable-next-line no-console -- TODO(pino-migration)
       console.warn(
         `[go-workspace-extractor] duplicate module "${manifest.modulePath}" in "${groupPath}" and "${existing.groupPath}" — skipping "${groupPath}"`,
       );
diff --git a/gitnexus/src/core/group/extractors/grpc-extractor.ts b/gitnexus/src/core/group/extractors/grpc-extractor.ts
index b5782d9b3..4d7ad7932 100644
--- a/gitnexus/src/core/group/extractors/grpc-extractor.ts
+++ b/gitnexus/src/core/group/extractors/grpc-extractor.ts
@@ -344,6 +344,7 @@ export function resolveProtoConflict(
   // services under a fabricated package-qualified contract id.
   if (winners.length !== 1) {
     const paths = candidates.map((c) => c.protoPath).join(', ');
+    // eslint-disable-next-line no-console -- TODO(pino-migration)
     console.warn(
       `[grpc-extractor] Ambiguous proto resolution for service "${serviceName}" from ${sourceFilePath}: ${winners.length} candidates tied at score ${maxScore} among [${paths}] — skipping canonical contract`,
     );
diff --git a/gitnexus/src/core/group/extractors/java-workspace-extractor.ts b/gitnexus/src/core/group/extractors/java-workspace-extractor.ts
index 66ee35ee5..828e729ab 100644
--- a/gitnexus/src/core/group/extractors/java-workspace-extractor.ts
+++ b/gitnexus/src/core/group/extractors/java-workspace-extractor.ts
@@ -213,6 +213,7 @@ export async function extractJavaWorkspaceLinks(
     };
     const existing = projectsByKey.get(key);
     if (existing) {
+      // eslint-disable-next-line no-console -- TODO(pino-migration)
       console.warn(
         `[java-workspace-extractor] duplicate artifact "${key}" in "${groupPath}" and "${existing.groupPath}" — skipping "${groupPath}"`,
       );
diff --git a/gitnexus/src/core/group/extractors/manifest-extractor.ts b/gitnexus/src/core/group/extractors/manifest-extractor.ts
index 3185f05e1..bba74f554 100644
--- a/gitnexus/src/core/group/extractors/manifest-extractor.ts
+++ b/gitnexus/src/core/group/extractors/manifest-extractor.ts
@@ -298,6 +298,7 @@ export class ManifestExtractor {
       // fail the whole manifest extraction. Unresolved contracts still
       // get a synthetic symbolUid below, so cross-impact can proceed.
       const message = err instanceof Error ? err.message : String(err);
+      // eslint-disable-next-line no-console -- TODO(pino-migration)
       console.warn(
         `[manifest-extractor] resolveSymbol failed for ${link.type}:${link.contract} ` +
           `in ${repoPathKey}: ${message}`,
diff --git a/gitnexus/src/core/group/extractors/node-workspace-extractor.ts b/gitnexus/src/core/group/extractors/node-workspace-extractor.ts
index 05a7c95dd..8e8c7dc89 100644
--- a/gitnexus/src/core/group/extractors/node-workspace-extractor.ts
+++ b/gitnexus/src/core/group/extractors/node-workspace-extractor.ts
@@ -205,6 +205,7 @@ export async function extractNodeWorkspaceLinks(
     };
     const existing = packagesByName.get(manifest.name);
     if (existing) {
+      // eslint-disable-next-line no-console -- TODO(pino-migration)
       console.warn(
         `[node-workspace-extractor] duplicate package name "${manifest.name}" in "${groupPath}" and "${existing.groupPath}" — skipping "${groupPath}"`,
       );
diff --git a/gitnexus/src/core/group/extractors/python-workspace-extractor.ts b/gitnexus/src/core/group/extractors/python-workspace-extractor.ts
index 5930808af..ccb3cd9f5 100644
--- a/gitnexus/src/core/group/extractors/python-workspace-extractor.ts
+++ b/gitnexus/src/core/group/extractors/python-workspace-extractor.ts
@@ -204,6 +204,7 @@ export async function extractPythonWorkspaceLinks(
     };
     const existing = packagesByImportName.get(manifest.importName);
     if (existing) {
+      // eslint-disable-next-line no-console -- TODO(pino-migration)
       console.warn(
         `[python-workspace-extractor] duplicate package "${manifest.name}" in "${groupPath}" and "${existing.groupPath}" — skipping "${groupPath}"`,
       );
diff --git a/gitnexus/src/core/group/extractors/rust-workspace-extractor.ts b/gitnexus/src/core/group/extractors/rust-workspace-extractor.ts
index c19af07ca..29efb12f5 100644
--- a/gitnexus/src/core/group/extractors/rust-workspace-extractor.ts
+++ b/gitnexus/src/core/group/extractors/rust-workspace-extractor.ts
@@ -224,6 +224,7 @@ export async function extractRustWorkspaceLinks(
     };
     const existing = cratesByName.get(manifest.name);
     if (existing) {
+      // eslint-disable-next-line no-console -- TODO(pino-migration)
       console.warn(
         `[rust-workspace-extractor] duplicate crate name "${manifest.name}" in "${groupPath}" and "${existing.groupPath}" — skipping "${groupPath}"`,
       );
diff --git a/gitnexus/src/core/group/service.ts b/gitnexus/src/core/group/service.ts
index a412ceaa8..dc942c7e5 100644
--- a/gitnexus/src/core/group/service.ts
+++ b/gitnexus/src/core/group/service.ts
@@ -170,10 +170,12 @@ async function loadContractRegistryResilient(
           contracts.push(row);
         } else {
           skippedCorrupt++;
+          // eslint-disable-next-line no-console -- TODO(pino-migration)
           console.warn('[group] skipping corrupt contract row in contracts.json');
         }
       } catch {
         skippedCorrupt++;
+        // eslint-disable-next-line no-console -- TODO(pino-migration)
         console.warn('[group] skipping corrupt contract row in contracts.json');
       }
     }
@@ -187,10 +189,12 @@ async function loadContractRegistryResilient(
           crossLinks.push(row);
         } else {
           skippedCorrupt++;
+          // eslint-disable-next-line no-console -- TODO(pino-migration)
           console.warn('[group] skipping corrupt crossLinks row in contracts.json');
         }
       } catch {
         skippedCorrupt++;
+        // eslint-disable-next-line no-console -- TODO(pino-migration)
         console.warn('[group] skipping corrupt crossLinks row in contracts.json');
       }
     }
diff --git a/gitnexus/src/core/group/sync.ts b/gitnexus/src/core/group/sync.ts
index 09b289033..4a2373f2b 100644
--- a/gitnexus/src/core/group/sync.ts
+++ b/gitnexus/src/core/group/sync.ts
@@ -198,6 +198,7 @@ export async function syncGroup(config: GroupConfig, opts?: SyncOptions): Promis
       allLinks = [...allLinks, ...wsResult.links];
       if (opts?.verbose) {
         for (const s of wsResult.stats) {
+          // eslint-disable-next-line no-console -- TODO(pino-migration)
           console.log(
             `  workspace-deps: discovered ${s.linkCount} cross-${s.ecosystem.toLowerCase()} links from ${s.projectCount} ${s.ecosystem} projects`,
           );
@@ -217,6 +218,7 @@ export async function syncGroup(config: GroupConfig, opts?: SyncOptions): Promis
     for (const link of allLinks) {
       const dangling = [link.from, link.to].filter((r) => !knownRepos.has(r));
       if (dangling.length > 0) {
+        // eslint-disable-next-line no-console -- TODO(pino-migration)
         console.warn(
           `[group/sync] manifest link ${link.type}:${link.contract} references repos not in config.repos: ${dangling.join(', ')} — cross-links will use synthetic UIDs`,
         );
@@ -228,6 +230,7 @@ export async function syncGroup(config: GroupConfig, opts?: SyncOptions): Promis
     autoContracts.push(...manifestResult.contracts);
     manifestCrossLinks = manifestResult.crossLinks;
     if (opts?.verbose) {
+      // eslint-disable-next-line no-console -- TODO(pino-migration)
       console.log(
         `  manifest: ${manifestCrossLinks.length} cross-links from ${allLinks.length} links (${config.links.length} declared + ${allLinks.length - config.links.length} discovered)`,
       );
diff --git a/gitnexus/src/core/ingestion/ast-cache.ts b/gitnexus/src/core/ingestion/ast-cache.ts
index 65da46ab8..69723abce 100644
--- a/gitnexus/src/core/ingestion/ast-cache.ts
+++ b/gitnexus/src/core/ingestion/ast-cache.ts
@@ -49,6 +49,7 @@ export const createASTCache = (maxSize: number = 50): ASTCache => {
         // will hand freed memory to scope-resolution.
         (tree as unknown as { delete?: () => void }).delete?.();
       } catch (e) {
+        // eslint-disable-next-line no-console -- TODO(pino-migration)
         console.warn('Failed to delete tree from WASM memory', e);
       }
     },
diff --git a/gitnexus/src/core/ingestion/call-processor.ts b/gitnexus/src/core/ingestion/call-processor.ts
index 1871d0605..203b14ede 100644
--- a/gitnexus/src/core/ingestion/call-processor.ts
+++ b/gitnexus/src/core/ingestion/call-processor.ts
@@ -784,6 +784,7 @@ export const processCalls = async (
       const query = new Parser.Query(lang, queryStr);
       matches = query.matches(tree.rootNode);
     } catch (queryError) {
+      // eslint-disable-next-line no-console -- TODO(pino-migration)
       console.warn(`Query error for ${file.path}:`, queryError);
       continue;
     }
@@ -1391,6 +1392,7 @@ export const processCalls = async (
 
   if (skippedByLang && skippedByLang.size > 0) {
     for (const [lang, count] of skippedByLang.entries()) {
+      // eslint-disable-next-line no-console -- TODO(pino-migration)
       console.warn(
         `[ingestion] Skipped ${count} ${lang} file(s) in call processing — ${lang} parser not available.`,
       );
diff --git a/gitnexus/src/core/ingestion/cluster-enricher.ts b/gitnexus/src/core/ingestion/cluster-enricher.ts
index b20ed2bad..f1291cb8b 100644
--- a/gitnexus/src/core/ingestion/cluster-enricher.ts
+++ b/gitnexus/src/core/ingestion/cluster-enricher.ts
@@ -128,6 +128,7 @@ export const enrichClusters = async (
       enrichments.set(community.id, enrichment);
     } catch (error) {
       // On error, fallback to heuristic
+      // eslint-disable-next-line no-console -- TODO(pino-migration)
       console.warn(`Failed to enrich cluster ${community.id}:`, error);
       enrichments.set(community.id, {
         name: community.heuristicLabel,
@@ -210,6 +211,7 @@ Output JSON array:
         }
       }
     } catch (error) {
+      // eslint-disable-next-line no-console -- TODO(pino-migration)
       console.warn('Batch enrichment failed, falling back to heuristics:', error);
       // Fallback for this batch
       for (const community of batch) {
diff --git a/gitnexus/src/core/ingestion/cobol/cobol-copy-expander.ts b/gitnexus/src/core/ingestion/cobol/cobol-copy-expander.ts
index 46a33001d..156dc4a96 100644
--- a/gitnexus/src/core/ingestion/cobol/cobol-copy-expander.ts
+++ b/gitnexus/src/core/ingestion/cobol/cobol-copy-expander.ts
@@ -454,6 +454,7 @@ export function expandCopies(
       if (visited.has(resolvedPath)) {
         if (!warnedCircular.has(resolvedPath)) {
           warnedCircular.add(resolvedPath);
+          // eslint-disable-next-line no-console -- TODO(pino-migration)
           console.warn(
             `[cobol-copy-expander] Circular COPY detected: ${cs.target} (${resolvedPath}) ` +
               `includes itself. Skipping expansion.`,
@@ -464,6 +465,7 @@ export function expandCopies(
 
       // Max depth exceeded — keep unexpanded
       if (depth >= maxDepth) {
+        // eslint-disable-next-line no-console -- TODO(pino-migration)
         console.warn(
           `[cobol-copy-expander] Max expansion depth (${maxDepth}) reached for ` +
             `COPY ${cs.target} in ${srcPath}. Skipping expansion.`,
@@ -475,6 +477,7 @@ export function expandCopies(
       if (++totalExpansions > MAX_TOTAL_EXPANSIONS) {
         if (!warnedCircular.has('__max_total__')) {
           warnedCircular.add('__max_total__');
+          // eslint-disable-next-line no-console -- TODO(pino-migration)
           console.warn(
             `[cobol-copy-expander] Max total expansions (${MAX_TOTAL_EXPANSIONS}) reached ` +
               `in ${srcPath}. Skipping further expansions.`,
diff --git a/gitnexus/src/core/ingestion/filesystem-walker.ts b/gitnexus/src/core/ingestion/filesystem-walker.ts
index 71a4046f2..81ea95b95 100644
--- a/gitnexus/src/core/ingestion/filesystem-walker.ts
+++ b/gitnexus/src/core/ingestion/filesystem-walker.ts
@@ -74,9 +74,11 @@ export const walkRepositoryPaths = async (
   if (skippedLarge > 0) {
     const isDefault = maxFileSizeBytes === DEFAULT_MAX_FILE_SIZE_BYTES;
     const suffix = isDefault ? ', likely generated/vendored' : '';
+    // eslint-disable-next-line no-console -- TODO(pino-migration)
     console.warn(`  Skipped ${skippedLarge} large files (>${maxFileSizeBytes / 1024}KB${suffix})`);
     if (isVerboseIngestionEnabled()) {
       for (const p of skippedLargePaths) {
+        // eslint-disable-next-line no-console -- TODO(pino-migration)
         console.warn(`  - ${p}`);
       }
     }
diff --git a/gitnexus/src/core/ingestion/heritage-processor.ts b/gitnexus/src/core/ingestion/heritage-processor.ts
index 12e59a19a..8e4de1bf2 100644
--- a/gitnexus/src/core/ingestion/heritage-processor.ts
+++ b/gitnexus/src/core/ingestion/heritage-processor.ts
@@ -237,6 +237,7 @@ export const processHeritage = async (
       query = new Parser.Query(treeSitterLang, queryStr);
       matches = query.matches(tree.rootNode);
     } catch (queryError) {
+      // eslint-disable-next-line no-console -- TODO(pino-migration)
       console.warn(`Heritage query error for ${file.path}:`, queryError);
       continue;
     }
@@ -267,6 +268,7 @@ export const processHeritage = async (
 
   if (skippedByLang && skippedByLang.size > 0) {
     for (const [lang, count] of skippedByLang.entries()) {
+      // eslint-disable-next-line no-console -- TODO(pino-migration)
       console.warn(
         `[ingestion] Skipped ${count} ${lang} file(s) in heritage processing — ${lang} parser not available.`,
       );
diff --git a/gitnexus/src/core/ingestion/import-processor.ts b/gitnexus/src/core/ingestion/import-processor.ts
index b669d2744..a8bcf2a69 100644
--- a/gitnexus/src/core/ingestion/import-processor.ts
+++ b/gitnexus/src/core/ingestion/import-processor.ts
@@ -324,13 +324,21 @@ export const processImports = async (
       matches = query.matches(tree.rootNode);
     } catch (queryError: any) {
       if (isDev) {
+        // eslint-disable-next-line no-console -- TODO(pino-migration)
         console.group(`🔴 Query Error: ${file.path}`);
+        // eslint-disable-next-line no-console -- TODO(pino-migration)
         console.log('Language:', language);
+        // eslint-disable-next-line no-console -- TODO(pino-migration)
         console.log('Query (first 200 chars):', queryStr.substring(0, 200) + '...');
+        // eslint-disable-next-line no-console -- TODO(pino-migration)
         console.log('Error:', queryError?.message || queryError);
+        // eslint-disable-next-line no-console -- TODO(pino-migration)
         console.log('File content (first 300 chars):', file.content.substring(0, 300));
+        // eslint-disable-next-line no-console -- TODO(pino-migration)
         console.log('AST root type:', tree.rootNode?.type);
+        // eslint-disable-next-line no-console -- TODO(pino-migration)
         console.log('AST has errors:', tree.rootNode?.hasError);
+        // eslint-disable-next-line no-console -- TODO(pino-migration)
         console.groupEnd();
       }
 
@@ -346,6 +354,7 @@ export const processImports = async (
         const sourceNode = captureMap['import.source'];
         if (!sourceNode) {
           if (isDev) {
+            // eslint-disable-next-line no-console -- TODO(pino-migration)
             console.log(`⚠️ Import captured but no source node in ${file.path}`);
           }
           return;
@@ -399,6 +408,7 @@ export const processImports = async (
 
   if (skippedByLang && skippedByLang.size > 0) {
     for (const [lang, count] of skippedByLang.entries()) {
+      // eslint-disable-next-line no-console -- TODO(pino-migration)
       console.warn(
         `[ingestion] Skipped ${count} ${lang} file(s) in import processing — ${lang} parser not available.`,
       );
@@ -406,6 +416,7 @@ export const processImports = async (
   }
 
   if (isDev) {
+    // eslint-disable-next-line no-console -- TODO(pino-migration)
     console.log(
       `📊 Import processing complete: ${getResolvedCount()}/${totalImportsFound} imports resolved to graph edges`,
     );
@@ -498,6 +509,7 @@ export const processImportsFromExtracted = async (
   );
 
   if (isDev) {
+    // eslint-disable-next-line no-console -- TODO(pino-migration)
     console.log(
       `📊 Import processing (fast path): ${getResolvedCount()}/${totalImportsFound} imports resolved to graph edges`,
     );
diff --git a/gitnexus/src/core/ingestion/language-config.ts b/gitnexus/src/core/ingestion/language-config.ts
index 682d7b190..a14a0d2ab 100644
--- a/gitnexus/src/core/ingestion/language-config.ts
+++ b/gitnexus/src/core/ingestion/language-config.ts
@@ -82,6 +82,7 @@ export async function loadTsconfigPaths(repoRoot: string): Promise<TsconfigPaths
 
       if (aliases.size > 0) {
         if (isDev) {
+          // eslint-disable-next-line no-console -- TODO(pino-migration)
           console.log(`📦 Loaded ${aliases.size} path aliases from ${filename}`);
         }
         return { aliases, baseUrl };
@@ -104,6 +105,7 @@ export async function loadGoModulePath(repoRoot: string): Promise<GoModuleConfig
     const match = content.match(/^module\s+(\S+)/m);
     if (match) {
       if (isDev) {
+        // eslint-disable-next-line no-console -- TODO(pino-migration)
         console.log(`📦 Loaded Go module path: ${match[1]}`);
       }
       return { modulePath: match[1] };
@@ -132,6 +134,7 @@ export async function loadComposerConfig(repoRoot: string): Promise<ComposerConf
     }
 
     if (isDev) {
+      // eslint-disable-next-line no-console -- TODO(pino-migration)
       console.log(`📦 Loaded ${psr4.size} PSR-4 mappings from composer.json`);
     }
     return { psr4 };
@@ -178,6 +181,7 @@ export async function loadCSharpProjectConfig(repoRoot: string): Promise<CSharpP
             const projectDir = path.relative(repoRoot, dir).replace(/\\/g, '/');
             configs.push({ rootNamespace, projectDir });
             if (isDev) {
+              // eslint-disable-next-line no-console -- TODO(pino-migration)
               console.log(
                 `📦 Loaded C# project: ${entry.name} (namespace: ${rootNamespace}, dir: ${projectDir})`,
               );
@@ -217,6 +221,7 @@ export async function loadSwiftPackageConfig(repoRoot: string): Promise<SwiftPac
 
   if (targets.size > 0) {
     if (isDev) {
+      // eslint-disable-next-line no-console -- TODO(pino-migration)
       console.log(`📦 Loaded ${targets.size} Swift package targets`);
     }
     return { targets };
diff --git a/gitnexus/src/core/ingestion/method-extractors/generic.ts b/gitnexus/src/core/ingestion/method-extractors/generic.ts
index 7e15f2458..886f0756d 100644
--- a/gitnexus/src/core/ingestion/method-extractors/generic.ts
+++ b/gitnexus/src/core/ingestion/method-extractors/generic.ts
@@ -158,6 +158,7 @@ function findBodies(node: SyntaxNode, bodyNodeSet: Set<string>): SyntaxNode[] {
     // Fallback: body field exists but its type is not in bodyNodeTypes.
     // This may indicate a config typo — log for debugging if NODE_ENV is development.
     if (process.env.NODE_ENV === 'development') {
+      // eslint-disable-next-line no-console -- TODO(pino-migration)
       console.warn(
         `[MethodExtractor] body field type '${bodyField.type}' not in bodyNodeTypes for node '${node.type}'`,
       );
diff --git a/gitnexus/src/core/ingestion/parsing-processor.ts b/gitnexus/src/core/ingestion/parsing-processor.ts
index 86b419990..e7191e554 100644
--- a/gitnexus/src/core/ingestion/parsing-processor.ts
+++ b/gitnexus/src/core/ingestion/parsing-processor.ts
@@ -191,6 +191,7 @@ const processParsingWithWorkers = async (
     const summary = Array.from(skippedLanguages.entries())
       .map(([lang, count]) => `${lang}: ${count}`)
       .join(', ');
+    // eslint-disable-next-line no-console -- TODO(pino-migration)
     console.warn(`  Skipped unsupported languages: ${summary}`);
   }
 
@@ -382,6 +383,7 @@ const processParsingSequential = async (
         bufferSize: getTreeSitterBufferSize(parseContent),
       });
     } catch (parseError) {
+      // eslint-disable-next-line no-console -- TODO(pino-migration)
       console.warn(`Skipping unparseable file: ${file.path}`);
       continue;
     }
@@ -408,6 +410,7 @@ const processParsingSequential = async (
       query = new Parser.Query(language, queryString);
       matches = query.matches(tree.rootNode);
     } catch (queryError) {
+      // eslint-disable-next-line no-console -- TODO(pino-migration)
       console.warn(`Query error for ${file.path}:`, queryError);
       continue;
     }
@@ -701,6 +704,7 @@ const processParsingSequential = async (
 
   if (skippedByLang && skippedByLang.size > 0) {
     for (const [lang, count] of skippedByLang.entries()) {
+      // eslint-disable-next-line no-console -- TODO(pino-migration)
       console.warn(
         `[ingestion] Skipped ${count} ${lang} file(s) in parsing processing — ${lang} parser not available.`,
       );
@@ -742,6 +746,7 @@ export const processParsing = async (
       // in scope-resolution with an empty cache and get re-parsed.
       // Surfacing this in PROF mode prevents silent perf cliffs when
       // a repo crosses the worker-pool threshold.
+      // eslint-disable-next-line no-console -- TODO(pino-migration)
       console.warn(
         `[scope-resolution prof] worker pool engaged for ${files.length} files — cross-phase tree cache will be empty; scope-resolution re-parses.`,
       );
@@ -757,6 +762,7 @@ export const processParsing = async (
       );
     } catch (err) {
       const message = err instanceof Error ? err.message : String(err);
+      // eslint-disable-next-line no-console -- TODO(pino-migration)
       console.warn('Worker pool parsing stopped; continuing with sequential parser:', message);
       reportProgress?.(
         lastProgress,
diff --git a/gitnexus/src/core/ingestion/pipeline-phases/cobol.ts b/gitnexus/src/core/ingestion/pipeline-phases/cobol.ts
index cfe6b6ce2..2ead44be3 100644
--- a/gitnexus/src/core/ingestion/pipeline-phases/cobol.ts
+++ b/gitnexus/src/core/ingestion/pipeline-phases/cobol.ts
@@ -47,6 +47,7 @@ export const cobolPhase: PipelinePhase<CobolOutput> = {
     const cobolResult = processCobol(ctx.graph, cobolFiles, allPathSet);
 
     if (isDev) {
+      // eslint-disable-next-line no-console -- TODO(pino-migration)
       console.log(
         `  COBOL: ${cobolResult.programs} programs, ${cobolResult.paragraphs} paragraphs, ${cobolResult.sections} sections from ${cobolFiles.length} files`,
       );
@@ -55,11 +56,13 @@ export const cobolPhase: PipelinePhase<CobolOutput> = {
         cobolResult.execCicsBlocks > 0 ||
         cobolResult.entryPoints > 0
       ) {
+        // eslint-disable-next-line no-console -- TODO(pino-migration)
         console.log(
           `  COBOL enriched: ${cobolResult.execSqlBlocks} SQL blocks, ${cobolResult.execCicsBlocks} CICS blocks, ${cobolResult.entryPoints} entry points, ${cobolResult.moves} moves, ${cobolResult.fileDeclarations} file declarations`,
         );
       }
       if (cobolResult.jclJobs > 0) {
+        // eslint-disable-next-line no-console -- TODO(pino-migration)
         console.log(`  JCL: ${cobolResult.jclJobs} jobs, ${cobolResult.jclSteps} steps`);
       }
     }
diff --git a/gitnexus/src/core/ingestion/pipeline-phases/communities.ts b/gitnexus/src/core/ingestion/pipeline-phases/communities.ts
index 6a302b8b9..d68821871 100644
--- a/gitnexus/src/core/ingestion/pipeline-phases/communities.ts
+++ b/gitnexus/src/core/ingestion/pipeline-phases/communities.ts
@@ -47,6 +47,7 @@ export const communitiesPhase: PipelinePhase<CommunitiesOutput> = {
     });
 
     if (isDev) {
+      // eslint-disable-next-line no-console -- TODO(pino-migration)
       console.log(
         `🏘️ Community detection: ${communityResult.stats.totalCommunities} communities found (modularity: ${communityResult.stats.modularity.toFixed(3)})`,
       );
diff --git a/gitnexus/src/core/ingestion/pipeline-phases/cross-file-impl.ts b/gitnexus/src/core/ingestion/pipeline-phases/cross-file-impl.ts
index 334ff57df..a8dd94d44 100644
--- a/gitnexus/src/core/ingestion/pipeline-phases/cross-file-impl.ts
+++ b/gitnexus/src/core/ingestion/pipeline-phases/cross-file-impl.ts
@@ -60,6 +60,7 @@ export async function runCrossFileBindingPropagation(
   const { levels, cycleCount } = topologicalLevelSort(ctx.importMap);
 
   if (isDev && cycleCount > 0) {
+    // eslint-disable-next-line no-console -- TODO(pino-migration)
     console.log(`🔄 ${cycleCount} files in import cycles (processed last in undefined order)`);
   }
 
@@ -88,6 +89,7 @@ export async function runCrossFileBindingPropagation(
   const gapRatio = totalFiles > 0 ? filesWithGaps / totalFiles : 0;
   if (gapRatio < CROSS_FILE_SKIP_THRESHOLD && filesWithGaps < gapThreshold) {
     if (isDev) {
+      // eslint-disable-next-line no-console -- TODO(pino-migration)
       console.log(
         `⏭️ Cross-file re-resolution skipped (${filesWithGaps}/${totalFiles} files, ${(gapRatio * 100).toFixed(1)}% < ${CROSS_FILE_SKIP_THRESHOLD * 100}% threshold)`,
       );
@@ -193,6 +195,7 @@ export async function runCrossFileBindingPropagation(
 
     if (crossFileResolved >= MAX_CROSS_FILE_REPROCESS) {
       if (isDev)
+        // eslint-disable-next-line no-console -- TODO(pino-migration)
         console.log(`⚠️ Cross-file re-resolution capped at ${MAX_CROSS_FILE_REPROCESS} files`);
       break;
     }
@@ -204,6 +207,7 @@ export async function runCrossFileBindingPropagation(
     const elapsed = Date.now() - crossFileStart;
     const totalElapsed = Date.now() - pipelineStart;
     const reResolutionPct = totalElapsed > 0 ? ((elapsed / totalElapsed) * 100).toFixed(1) : '0';
+    // eslint-disable-next-line no-console -- TODO(pino-migration)
     console.log(
       `🔗 Cross-file re-resolution: ${crossFileResolved} candidates re-processed` +
         ` in ${elapsed}ms (${reResolutionPct}% of total ingestion time so far)`,
diff --git a/gitnexus/src/core/ingestion/pipeline-phases/cross-file.ts b/gitnexus/src/core/ingestion/pipeline-phases/cross-file.ts
index e1e907a0b..ac3ee54c7 100644
--- a/gitnexus/src/core/ingestion/pipeline-phases/cross-file.ts
+++ b/gitnexus/src/core/ingestion/pipeline-phases/cross-file.ts
@@ -59,10 +59,12 @@ export const crossFilePhase: PipelinePhase<CrossFileOutput> = {
       if (isDev) {
         if (bindingAccumulator.totalBindings > 0) {
           const memKB = Math.round(bindingAccumulator.estimateMemoryBytes() / 1024);
+          // eslint-disable-next-line no-console -- TODO(pino-migration)
           console.log(
             `📦 BindingAccumulator: ${bindingAccumulator.totalBindings} bindings across ${bindingAccumulator.fileCount} files (~${memKB} KB)`,
           );
         } else if (totalFiles > 0) {
+          // eslint-disable-next-line no-console -- TODO(pino-migration)
           console.log(
             `📦 BindingAccumulator: EMPTY — 0 bindings across 0 files despite ${totalFiles} parsed files. If the codebase has typed bindings, this indicates an upstream regression.`,
           );
diff --git a/gitnexus/src/core/ingestion/pipeline-phases/markdown.ts b/gitnexus/src/core/ingestion/pipeline-phases/markdown.ts
index 6b3853b9d..43631a3a9 100644
--- a/gitnexus/src/core/ingestion/pipeline-phases/markdown.ts
+++ b/gitnexus/src/core/ingestion/pipeline-phases/markdown.ts
@@ -48,6 +48,7 @@ export const markdownPhase: PipelinePhase<MarkdownOutput> = {
     const mdResult = processMarkdown(ctx.graph, mdFiles, allPathSet);
 
     if (isDev) {
+      // eslint-disable-next-line no-console -- TODO(pino-migration)
       console.log(
         `  Markdown: ${mdResult.sections} sections, ${mdResult.links} cross-links from ${mdFiles.length} files`,
       );
diff --git a/gitnexus/src/core/ingestion/pipeline-phases/mro.ts b/gitnexus/src/core/ingestion/pipeline-phases/mro.ts
index 372ae32b0..9f5bbb0a2 100644
--- a/gitnexus/src/core/ingestion/pipeline-phases/mro.ts
+++ b/gitnexus/src/core/ingestion/pipeline-phases/mro.ts
@@ -42,6 +42,7 @@ export const mroPhase: PipelinePhase<MROOutput> = {
     const mroResult = computeMRO(ctx.graph);
 
     if (isDev && mroResult.entries.length > 0) {
+      // eslint-disable-next-line no-console -- TODO(pino-migration)
       console.log(
         `🔀 MRO: ${mroResult.entries.length} classes analyzed, ${mroResult.ambiguityCount} ambiguities, ${mroResult.overrideEdges} METHOD_OVERRIDES, ${mroResult.methodImplementsEdges} METHOD_IMPLEMENTS`,
       );
diff --git a/gitnexus/src/core/ingestion/pipeline-phases/orm.ts b/gitnexus/src/core/ingestion/pipeline-phases/orm.ts
index ebdac018a..2f6082f76 100644
--- a/gitnexus/src/core/ingestion/pipeline-phases/orm.ts
+++ b/gitnexus/src/core/ingestion/pipeline-phases/orm.ts
@@ -91,6 +91,7 @@ function processORMQueries(
   }
 
   if (isDev) {
+    // eslint-disable-next-line no-console -- TODO(pino-migration)
     console.log(
       `ORM dataflow: ${edgesCreated} QUERIES edges, ${modelNodes.size} models (${queries.length} total calls)`,
     );
diff --git a/gitnexus/src/core/ingestion/pipeline-phases/parse-impl.ts b/gitnexus/src/core/ingestion/pipeline-phases/parse-impl.ts
index 025bdbeb7..b6f1c7047 100644
--- a/gitnexus/src/core/ingestion/pipeline-phases/parse-impl.ts
+++ b/gitnexus/src/core/ingestion/pipeline-phases/parse-impl.ts
@@ -136,6 +136,7 @@ export async function runChunkedParseAndResolve(
     }
   }
   for (const [lang, count] of skippedByLang) {
+    // eslint-disable-next-line no-console -- TODO(pino-migration)
     console.warn(
       `Skipping ${count} ${lang} file(s) — ${lang} parser not available (native binding may not have built). Try: npm rebuild tree-sitter-${lang}`,
     );
@@ -171,6 +172,7 @@ export async function runChunkedParseAndResolve(
 
   if (isDev) {
     const totalMB = parseableScanned.reduce((s, f) => s + f.size, 0) / (1024 * 1024);
+    // eslint-disable-next-line no-console -- TODO(pino-migration)
     console.log(
       `📂 Scan: ${totalFiles} paths, ${totalParseable} parseable (${totalMB.toFixed(0)}MB), ${numChunks} chunks @ ${CHUNK_BYTE_BUDGET / (1024 * 1024)}MB budget`,
     );
@@ -220,6 +222,7 @@ export async function runChunkedParseAndResolve(
       }
       workerPool = createWorkerPool(workerUrl);
     } catch (err) {
+      // eslint-disable-next-line no-console -- TODO(pino-migration)
       console.warn(
         'Worker pool creation failed, using sequential fallback:',
         (err as Error).message,
@@ -339,6 +342,7 @@ export async function runChunkedParseAndResolve(
             exportedTypeMap,
           );
           if (isDev && enrichedCount > 0) {
+            // eslint-disable-next-line no-console -- TODO(pino-migration)
             console.log(
               `🔗 E1: Seeded ${enrichedCount} cross-file receiver types (chunk ${chunkIdx + 1})`,
             );
@@ -538,6 +542,7 @@ export async function runChunkedParseAndResolve(
       const rcStats = ctx.getStats();
       const total = rcStats.cacheHits + rcStats.cacheMisses;
       const hitRate = total > 0 ? ((rcStats.cacheHits / total) * 100).toFixed(1) : '0';
+      // eslint-disable-next-line no-console -- TODO(pino-migration)
       console.log(
         `🔍 Resolution cache: ${rcStats.cacheHits} hits, ${rcStats.cacheMisses} misses (${hitRate}% hit rate)`,
       );
@@ -554,12 +559,14 @@ export async function runChunkedParseAndResolve(
       bindingAccumulator.finalize();
       const enriched = enrichExportedTypeMap(bindingAccumulator, graph, exportedTypeMap);
       if (isDev && enriched > 0) {
+        // eslint-disable-next-line no-console -- TODO(pino-migration)
         console.log(
           `🔗 Worker TypeEnv enrichment: ${enriched} fixpoint-inferred exports added to ExportedTypeMap`,
         );
       }
     } catch (enrichErr) {
       if (isDev) {
+        // eslint-disable-next-line no-console -- TODO(pino-migration)
         console.warn(
           'Post-fallback finalize/enrich failed during cleanup:',
           (enrichErr as Error).message,
@@ -571,6 +578,7 @@ export async function runChunkedParseAndResolve(
   if (!hasSynthesized) {
     const synthesized = synthesizeWildcardImportBindings(graph, ctx);
     if (isDev && synthesized > 0) {
+      // eslint-disable-next-line no-console -- TODO(pino-migration)
       console.log(
         `🔗 Synthesized ${synthesized} additional wildcard import bindings (Go/Ruby/C++/Swift/Python)`,
       );
diff --git a/gitnexus/src/core/ingestion/pipeline-phases/processes.ts b/gitnexus/src/core/ingestion/pipeline-phases/processes.ts
index 209906cfb..4358d24e5 100644
--- a/gitnexus/src/core/ingestion/pipeline-phases/processes.ts
+++ b/gitnexus/src/core/ingestion/pipeline-phases/processes.ts
@@ -67,6 +67,7 @@ export const processesPhase: PipelinePhase<ProcessesOutput> = {
     );
 
     if (isDev) {
+      // eslint-disable-next-line no-console -- TODO(pino-migration)
       console.log(
         `🔄 Process detection: ${processResult.stats.totalProcesses} processes found (${processResult.stats.crossCommunityCount} cross-community)`,
       );
@@ -167,6 +168,7 @@ export const processesPhase: PipelinePhase<ProcessesOutput> = {
         }
       }
       if (isDev && linked > 0) {
+        // eslint-disable-next-line no-console -- TODO(pino-migration)
         console.log(`🔗 Linked ${linked} Route/Tool nodes to execution flows`);
       }
     }
diff --git a/gitnexus/src/core/ingestion/pipeline-phases/routes.ts b/gitnexus/src/core/ingestion/pipeline-phases/routes.ts
index cd0a65f9d..3dc72c114 100644
--- a/gitnexus/src/core/ingestion/pipeline-phases/routes.ts
+++ b/gitnexus/src/core/ingestion/pipeline-phases/routes.ts
@@ -174,6 +174,7 @@ export const routesPhase: PipelinePhase<RoutesOutput> = {
       }
 
       if (isDev) {
+        // eslint-disable-next-line no-console -- TODO(pino-migration)
         console.log(
           `🗺️ Route registry: ${routeRegistry.size} routes${duplicateRoutes > 0 ? ` (${duplicateRoutes} duplicate URLs skipped)` : ''}`,
         );
@@ -224,6 +225,7 @@ export const routesPhase: PipelinePhase<RoutesOutput> = {
             linkedCount++;
           }
           if (isDev && linkedCount > 0) {
+            // eslint-disable-next-line no-console -- TODO(pino-migration)
             console.log(
               `🛡️ Linked ${mwPath} middleware [${mwLabel.join(', ')}] to ${linkedCount} routes`,
             );
@@ -290,6 +292,7 @@ export const routesPhase: PipelinePhase<RoutesOutput> = {
 
       processNextjsFetchRoutes(ctx.graph, allFetchCalls, routeURLToFile, consumerContents);
       if (isDev) {
+        // eslint-disable-next-line no-console -- TODO(pino-migration)
         console.log(
           `🔗 Processed ${allFetchCalls.length} fetch() calls against ${routeRegistry.size} routes`,
         );
diff --git a/gitnexus/src/core/ingestion/pipeline-phases/runner.ts b/gitnexus/src/core/ingestion/pipeline-phases/runner.ts
index 89543e049..d5c789e13 100644
--- a/gitnexus/src/core/ingestion/pipeline-phases/runner.ts
+++ b/gitnexus/src/core/ingestion/pipeline-phases/runner.ts
@@ -176,6 +176,7 @@ export async function runPipeline(
     const start = Date.now();
 
     if (isDev) {
+      // eslint-disable-next-line no-console -- TODO(pino-migration)
       console.log(`▶ Phase: ${phase.name}`);
     }
 
@@ -220,6 +221,7 @@ export async function runPipeline(
     });
 
     if (isDev) {
+      // eslint-disable-next-line no-console -- TODO(pino-migration)
       console.log(`✓ Phase: ${phase.name} (${durationMs}ms)`);
     }
   }
diff --git a/gitnexus/src/core/ingestion/pipeline-phases/tools.ts b/gitnexus/src/core/ingestion/pipeline-phases/tools.ts
index 023c8a1af..053a5a6f0 100644
--- a/gitnexus/src/core/ingestion/pipeline-phases/tools.ts
+++ b/gitnexus/src/core/ingestion/pipeline-phases/tools.ts
@@ -104,6 +104,7 @@ export const toolsPhase: PipelinePhase<ToolsOutput> = {
       }
 
       if (isDev) {
+        // eslint-disable-next-line no-console -- TODO(pino-migration)
         console.log(`🔧 Tool registry: ${toolDefs.length} tools detected`);
       }
     }
diff --git a/gitnexus/src/core/ingestion/process-processor.ts b/gitnexus/src/core/ingestion/process-processor.ts
index a12378c98..10228008b 100644
--- a/gitnexus/src/core/ingestion/process-processor.ts
+++ b/gitnexus/src/core/ingestion/process-processor.ts
@@ -319,12 +319,15 @@ const findEntryPoints = (
 
   // DEBUG: Log top candidates with new scoring details
   if (sorted.length > 0 && isDev) {
+    // eslint-disable-next-line no-console -- TODO(pino-migration)
     console.log(`[Process] Top 10 entry point candidates (new scoring):`);
     sorted.slice(0, 10).forEach((c, i) => {
       const node = graph.getNode(c.id);
       const exported = node?.properties.isExported ? '✓' : '✗';
       const shortPath = node?.properties.filePath?.split('/').slice(-2).join('/') || '';
+      // eslint-disable-next-line no-console -- TODO(pino-migration)
       console.log(`  ${i + 1}. ${node?.properties.name} [exported:${exported}] (${shortPath})`);
+      // eslint-disable-next-line no-console -- TODO(pino-migration)
       console.log(`     score: ${c.score.toFixed(2)} = [${c.reasons.join(' × ')}]`);
     });
   }
diff --git a/gitnexus/src/core/ingestion/scope-extractor-bridge.ts b/gitnexus/src/core/ingestion/scope-extractor-bridge.ts
index 1774cefca..fc63f29bf 100644
--- a/gitnexus/src/core/ingestion/scope-extractor-bridge.ts
+++ b/gitnexus/src/core/ingestion/scope-extractor-bridge.ts
@@ -53,6 +53,7 @@ export function extractParsedFile(
       err instanceof Error ? err.message : String(err)
     }`;
     if (onWarn !== undefined) onWarn(message);
+    // eslint-disable-next-line no-console -- TODO(pino-migration)
     else console.warn(message);
     return undefined;
   }
diff --git a/gitnexus/src/core/ingestion/scope-resolution/pipeline/phase.ts b/gitnexus/src/core/ingestion/scope-resolution/pipeline/phase.ts
index 5dbb3715f..900a7f1fd 100644
--- a/gitnexus/src/core/ingestion/scope-resolution/pipeline/phase.ts
+++ b/gitnexus/src/core/ingestion/scope-resolution/pipeline/phase.ts
@@ -144,6 +144,7 @@ export const scopeResolutionPhase: PipelinePhase<ScopeResolutionOutput> = {
           resolutionConfig,
           onWarn: (msg) => {
             if (isSemanticModelValidatorEnabled()) {
+              // eslint-disable-next-line no-console -- TODO(pino-migration)
               console.warn(`[scope-resolution:${lang}] ${msg}`);
             }
           },
@@ -162,6 +163,7 @@ export const scopeResolutionPhase: PipelinePhase<ScopeResolutionOutput> = {
       });
 
       if (isDev) {
+        // eslint-disable-next-line no-console -- TODO(pino-migration)
         console.log(
           `[scope-resolution:${lang}] ${stats.filesProcessed} files → ${stats.importsEmitted} IMPORTS + ${stats.referenceEdgesEmitted} reference edges (${stats.resolve.unresolved} unresolved sites, ${stats.referenceSkipped} skipped)`,
         );
diff --git a/gitnexus/src/core/ingestion/scope-resolution/pipeline/run.ts b/gitnexus/src/core/ingestion/scope-resolution/pipeline/run.ts
index b069f0dd1..947db5eb7 100644
--- a/gitnexus/src/core/ingestion/scope-resolution/pipeline/run.ts
+++ b/gitnexus/src/core/ingestion/scope-resolution/pipeline/run.ts
@@ -279,6 +279,7 @@ export function runScopeResolution(
   if (PROF) {
     const tEnd = process.hrtime.bigint();
     const ns = (a: bigint, b: bigint): number => Number(b - a) / 1_000_000;
+    // eslint-disable-next-line no-console -- TODO(pino-migration)
     console.warn(
       `[scope-resolution prof] extract=${ns(tStart, tExtract).toFixed(0)}ms` +
         ` finalize=${ns(tExtract, tFinalize).toFixed(0)}ms` +
diff --git a/gitnexus/src/core/ingestion/type-env.ts b/gitnexus/src/core/ingestion/type-env.ts
index 998e7a59e..011655f5f 100644
--- a/gitnexus/src/core/ingestion/type-env.ts
+++ b/gitnexus/src/core/ingestion/type-env.ts
@@ -769,6 +769,7 @@ const resolveFixpointBindings = (
     if (iter === MAX_FIXPOINT_ITERATIONS - 1 && process.env.GITNEXUS_DEBUG) {
       const unresolved = pendingItems.length - resolved.size;
       if (unresolved > 0) {
+        // eslint-disable-next-line no-console -- TODO(pino-migration)
         console.warn(
           `[type-env] fixpoint hit iteration cap (${MAX_FIXPOINT_ITERATIONS}), ${unresolved} items unresolved`,
         );
diff --git a/gitnexus/src/core/ingestion/utils/max-file-size.ts b/gitnexus/src/core/ingestion/utils/max-file-size.ts
index 0c418bfd4..8363ec946 100644
--- a/gitnexus/src/core/ingestion/utils/max-file-size.ts
+++ b/gitnexus/src/core/ingestion/utils/max-file-size.ts
@@ -11,6 +11,7 @@ const warned = new Set<string>();
 const warnOnce = (key: string, message: string): void => {
   if (warned.has(key)) return;
   warned.add(key);
+  // eslint-disable-next-line no-console -- TODO(pino-migration)
   console.warn(message);
 };
 
diff --git a/gitnexus/src/core/ingestion/workers/parse-worker.ts b/gitnexus/src/core/ingestion/workers/parse-worker.ts
index 669465fe2..80ba5e7b7 100644
--- a/gitnexus/src/core/ingestion/workers/parse-worker.ts
+++ b/gitnexus/src/core/ingestion/workers/parse-worker.ts
@@ -1385,6 +1385,7 @@ const processFileGroup = (
     if (parentPort) {
       parentPort.postMessage({ type: 'warning', message });
     } else {
+      // eslint-disable-next-line no-console -- TODO(pino-migration)
       console.warn(message);
     }
     return;
@@ -1414,6 +1415,7 @@ const processFileGroup = (
         bufferSize: getTreeSitterBufferSize(parseContent),
       });
     } catch (err) {
+      // eslint-disable-next-line no-console -- TODO(pino-migration)
       console.warn(
         `Failed to parse file ${file.path}: ${err instanceof Error ? err.message : String(err)}`,
       );
@@ -1427,6 +1429,7 @@ const processFileGroup = (
     try {
       matches = query.matches(tree.rootNode);
     } catch (err) {
+      // eslint-disable-next-line no-console -- TODO(pino-migration)
       console.warn(
         `Query execution failed for ${file.path}: ${err instanceof Error ? err.message : String(err)}`,
       );
@@ -1447,6 +1450,7 @@ const processFileGroup = (
       file.path,
       (message) => {
         if (parentPort) parentPort.postMessage({ type: 'warning', message });
+        // eslint-disable-next-line no-console -- TODO(pino-migration)
         else console.warn(message);
       },
       tree,
diff --git a/gitnexus/src/core/ingestion/workers/worker-pool.ts b/gitnexus/src/core/ingestion/workers/worker-pool.ts
index 4be6af6b1..5c02f2bd2 100644
--- a/gitnexus/src/core/ingestion/workers/worker-pool.ts
+++ b/gitnexus/src/core/ingestion/workers/worker-pool.ts
@@ -258,6 +258,7 @@ export const createWorkerPool = (
             splitDepth: job.splitDepth + 1,
             timeoutMs: nextTimeout,
           };
+          // eslint-disable-next-line no-console -- TODO(pino-migration)
           console.warn(
             `Worker ${workerIndex} parse job idle timeout after ${job.timeoutMs / 1000}s ` +
               `(${job.items.length} items, ${job.estimatedBytes} bytes, last progress: ${lastProgress}). ` +
@@ -271,6 +272,7 @@ export const createWorkerPool = (
 
         const nextAttempt = job.attempt + 1;
         if (nextAttempt <= poolOptions.maxTimeoutRetries) {
+          // eslint-disable-next-line no-console -- TODO(pino-migration)
           console.warn(
             `Worker ${workerIndex} parse job idle timeout after ${job.timeoutMs / 1000}s ` +
               `(single item, attempt ${nextAttempt}/${poolOptions.maxTimeoutRetries + 1}). ` +
@@ -365,6 +367,7 @@ export const createWorkerPool = (
             reportProgress();
           } else if (msg.type === 'warning') {
             resetIdleTimer();
+            // eslint-disable-next-line no-console -- TODO(pino-migration)
             console.warn(msg.message);
           } else if (msg.type === 'sub-batch-done') {
             waitingForFlush = true;
diff --git a/gitnexus/src/core/lbug/extension-loader.ts b/gitnexus/src/core/lbug/extension-loader.ts
index 9fbee871b..6ba78241b 100644
--- a/gitnexus/src/core/lbug/extension-loader.ts
+++ b/gitnexus/src/core/lbug/extension-loader.ts
@@ -188,6 +188,7 @@ export class ExtensionManager {
     const policy = opts.policy ?? this.options.policy ?? resolvePolicyFromEnv();
     const timeoutMs =
       opts.installTimeoutMs ?? this.options.installTimeoutMs ?? getExtensionInstallTimeoutMs();
+    // eslint-disable-next-line no-console -- TODO(pino-migration)
     const warn = this.options.warn ?? console.warn;
 
     if (policy === 'never') {
diff --git a/gitnexus/src/core/lbug/lbug-adapter.ts b/gitnexus/src/core/lbug/lbug-adapter.ts
index bdacadff9..61d856ce3 100644
--- a/gitnexus/src/core/lbug/lbug-adapter.ts
+++ b/gitnexus/src/core/lbug/lbug-adapter.ts
@@ -348,6 +348,7 @@ const doInitLbug = async (dbPath: string) => {
     } catch (err) {
       const msg = err instanceof Error ? err.message : String(err);
       if (!msg.includes('already exists')) {
+        // eslint-disable-next-line no-console -- TODO(pino-migration)
         console.warn(`⚠️ Schema creation warning: ${msg.slice(0, 120)}`);
       }
     }
@@ -701,6 +702,7 @@ export const insertNodeToLbug = async (
     return false;
   } catch (e: any) {
     // Node may already exist or other error
+    // eslint-disable-next-line no-console -- TODO(pino-migration)
     console.error(`Failed to insert ${label} node:`, e.message);
     return false;
   }
@@ -1028,6 +1030,7 @@ export const fetchExistingEmbeddingHashes = async (
           const nodeId = r.nodeId ?? r[0];
           if (nodeId) map.set(nodeId, STALE_HASH_SENTINEL);
         }
+        // eslint-disable-next-line no-console -- TODO(pino-migration)
         console.log(
           `[embed] ${map.size} nodes in legacy DB (missing chunk-aware columns) — all treated as stale`,
         );
@@ -1035,6 +1038,7 @@ export const fetchExistingEmbeddingHashes = async (
       } catch (fallbackErr: any) {
         const fallbackMsg = fallbackErr?.message ?? '';
         if (isMissingColumnOrTableError(fallbackMsg)) {
+          // eslint-disable-next-line no-console -- TODO(pino-migration)
           console.log(
             `[embed] CodeEmbedding table not yet present — full embedding run (${fallbackMsg})`,
           );
diff --git a/gitnexus/src/core/tree-sitter/parser-loader.ts b/gitnexus/src/core/tree-sitter/parser-loader.ts
index e79cdc599..f5e65c5e1 100644
--- a/gitnexus/src/core/tree-sitter/parser-loader.ts
+++ b/gitnexus/src/core/tree-sitter/parser-loader.ts
@@ -175,7 +175,9 @@ const logFailure = (key: string, result: LoadResult): void => {
   logged.add(key);
   const message = `[gitnexus] ${result.note} (${result.error.message})`;
 
+  // eslint-disable-next-line no-console -- TODO(pino-migration)
   if (result.severity === 'error') console.error(message);
+  // eslint-disable-next-line no-console -- TODO(pino-migration)
   else console.warn(message);
 };
 
diff --git a/gitnexus/src/core/wiki/cursor-client.ts b/gitnexus/src/core/wiki/cursor-client.ts
index 707f8e293..e0b85463c 100644
--- a/gitnexus/src/core/wiki/cursor-client.ts
+++ b/gitnexus/src/core/wiki/cursor-client.ts
@@ -21,6 +21,7 @@ function isVerbose(): boolean {
 
 function verboseLog(...args: unknown[]): void {
   if (isVerbose()) {
+    // eslint-disable-next-line no-console -- TODO(pino-migration)
     console.log('[cursor-cli]', ...args);
   }
 }
diff --git a/gitnexus/src/core/wiki/llm-client.ts b/gitnexus/src/core/wiki/llm-client.ts
index 6f446be15..1a69453e5 100644
--- a/gitnexus/src/core/wiki/llm-client.ts
+++ b/gitnexus/src/core/wiki/llm-client.ts
@@ -135,6 +135,7 @@ export async function callLLM(
 
   // Warn when using Azure legacy deployment URL without api-version
   if (azure && !config.apiVersion && config.baseUrl.includes('/deployments/')) {
+    // eslint-disable-next-line no-console -- TODO(pino-migration)
     console.warn(
       '[gitnexus] Warning: Azure legacy deployment URL detected but no api-version set. Add --api-version 2024-10-21 or use the v1 API format.',
     );
diff --git a/gitnexus/src/mcp/core/embedder.ts b/gitnexus/src/mcp/core/embedder.ts
index f506cdead..241d8ee06 100644
--- a/gitnexus/src/mcp/core/embedder.ts
+++ b/gitnexus/src/mcp/core/embedder.ts
@@ -51,6 +51,7 @@ export const initEmbedder = async (): Promise<FeatureExtractionPipeline> => {
       applyHfEnvOverrides(env);
       const embeddingConfig = resolveEmbeddingConfig();
 
+      // eslint-disable-next-line no-console -- TODO(pino-migration)
       console.error('GitNexus: Loading embedding model (first search may take a moment)...');
 
       const devicesToTry: Array<'dml' | 'cuda' | 'cpu'> =
@@ -82,6 +83,7 @@ export const initEmbedder = async (): Promise<FeatureExtractionPipeline> => {
             restoreStdout();
             process.stderr.write = realStderrWrite;
           }
+          // eslint-disable-next-line no-console -- TODO(pino-migration)
           console.error(`GitNexus: Embedding model loaded (${device})`);
           return embedderInstance!;
         } catch {
diff --git a/gitnexus/src/mcp/local/local-backend.ts b/gitnexus/src/mcp/local/local-backend.ts
index 68df9feaa..d8fba7af0 100644
--- a/gitnexus/src/mcp/local/local-backend.ts
+++ b/gitnexus/src/mcp/local/local-backend.ts
@@ -164,6 +164,7 @@ const confidenceForRelType = (relType: string | undefined): number =>
 /** Structured error logging for query failures — replaces empty catch blocks */
 function logQueryError(context: string, err: unknown): void {
   const msg = err instanceof Error ? err.message : String(err);
+  // eslint-disable-next-line no-console -- TODO(pino-migration)
   console.error(`GitNexus [${context}]: ${msg}`);
 }
 
@@ -184,6 +185,7 @@ function logQueryError(context: string, err: unknown): void {
 function logQueryTiming(query: string, phases: Record<string, number>): void {
   const totalMs = phases.wall ?? Object.values(phases).reduce((a, b) => a + b, 0);
   const truncated = query.length > 80 ? `${query.slice(0, 80)}…` : query;
+  // eslint-disable-next-line no-console -- TODO(pino-migration)
   console.error(
     `GitNexus [query:timing] query=${JSON.stringify(truncated)} totalMs=${totalMs} phases=${JSON.stringify(phases)}`,
   );
@@ -287,6 +289,7 @@ export class LocalBackend {
       // If kuzu exists but lbug doesn't, warn so the user knows to re-analyze.
       const kuzu = await cleanupOldKuzuFiles(storagePath);
       if (kuzu.found && kuzu.needsReindex) {
+        // eslint-disable-next-line no-console -- TODO(pino-migration)
         console.error(
           `GitNexus: "${entry.name}" has a stale KuzuDB index. Run: gitnexus analyze ${entry.path}`,
         );
@@ -637,6 +640,7 @@ export class LocalBackend {
     }
 
     this.warnedSiblingDrift.add(cacheKey);
+    // eslint-disable-next-line no-console -- TODO(pino-migration)
     console.error(`GitNexus: ${match.hint}`);
   }
 
@@ -990,6 +994,7 @@ export class LocalBackend {
     try {
       bm25Results = await searchFTSFromLbug(query, limit, repo.id);
     } catch (err: any) {
+      // eslint-disable-next-line no-console -- TODO(pino-migration)
       console.error('GitNexus: BM25/FTS search failed (FTS indexes may not exist) -', err.message);
       return { results: [], ftsUsed: false };
     }
@@ -1114,6 +1119,7 @@ export class LocalBackend {
         // policy. Emitted once per `LocalBackend` instance lifetime to avoid
         // noisy stderr on hot semantic-search paths (DoD §2.8).
         this.warnedVectorUnsupported = true;
+        // eslint-disable-next-line no-console -- TODO(pino-migration)
         console.error(
           'GitNexus [query:vector]: VECTOR extension not supported on this platform; using exact scan fallback',
         );